Search Database

Select Protein (1 found)

UniProt ID Gene Symbol Protein Name Organism Length Action
A0A087WVQ6 CLTC; hCG_1818599 Clathrin heavy chain Homo sapiens (Human) 1679 aa

Protein Details: A0A087WVQ6 (CLTC)

Protein Information
Accession A0A087WVQ6
Protein Names Clathrin heavy chain
Gene Symbol CLTC; hCG_1818599
Organism Homo sapiens (Human)
Length 1679 aa
Isoforms No isoforms
Related PMIDs 19137006 21076176 26876311 29575903 31251020 31382980 32944167 36430497
Database Sources No database sources
These studies detected palmitoylation of this protein in the samples.
Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.621
Bubble Size: Positive Samples Count Color Intensity: Positive Ratio
36
LNCaP cells
Specificity: 0.621
36/46 (78.3%)
11
Jurkat T cells
Specificity: 0.190
11/25 (44.0%)
4
PC3 cells
Specificity: 0.069
4/4 (100.0%)
4
Cerebral cortex
Specificity: 0.069
4/4 (100.0%)
1
U937 cells
Specificity: 0.017
1/1 (100.0%)
1
HeLa cells
Specificity: 0.017
1/1 (100.0%)
1
Prefrontal cortex
Specificity: 0.017
1/1 (100.0%)
0
DU145 cells
Specificity: 0.000
0/2 (0.0%)
0
T cells
Specificity: 0.000
0/4 (0.0%)
0
HAP1 cells
Specificity: 0.000
0/10 (0.0%)
0
293T cells
Specificity: 0.000
0/10 (0.0%)
0
CEMx174 cells
Specificity: 0.000
0/3 (0.0%)
0
Endothelial cells
Specificity: 0.000
0/2 (0.0%)
0
Liver membrane
Specificity: 0.000
0/1 (0.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID). The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples. Bars are grouped by tissue/cell line for easy comparison.
Protein Sequence
Single Types:
Experimental Database High Prediction Medium Prediction Low Prediction
Combined Types:
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
1-501MAQILPIRFQ11EHLQLQNLGI21NPANIGFSTL31TMESDKFICI41REKVGEQAQV
51-10051VIIDMNDPSN61PIRRPISADS71AIMNPASKVI81ALKGIKESGK91TLQIFNIEMK
101-150101SKMKAHTMTD111DVTFWKWISL121NTVALVTDNA131VYHWSMEGES141QPVKMFDRHS
151-200151SLAGCQIINY161RTDAKQKWLL171LTGISAQQNR181VVGAMQLYSV191DRKVSQPIEG
201-250201HAASFAQFKM211EGNAEESTLF221CFAVRGQAGG231KLHIIEVGTP241PTGNQPFPKK
251-300251AVDVFFPPEA261QNDFPVAMQI271SEKHDVVFLI281TKYGYIHLYD291LETGTCIYMN
301-350301RISGETIFVT311APHEATAGII321GVNRKGQVLS331VCVEEENIIP341YITNVLQNPD
351-400351LALRMAVRNN361LAGAEELFAR371KFNALFAQGN381YSEAAKVAAN391APKGILRTPD
401-450401TIRRFQSVPA411QPGQTSPLLQ421YFGILLDQGQ431LNKYESLELC441RPVLQQGRKQ
451-500451LLEKWLKEDK461LECSEELGDL471VKSVDPTLAL481SVYLRANVPN491KVIQCFAETG
501-550501QVQKIVLYAK511KVGYTPDWIF521LLRNVMRISP531DQGQQFAQML541VQDEEPLADI
551-600551TQIVDVFMEY561NLIQQCTAFL571LDALKNNRPS581EGPLQTRLLE591MNLMHAPQVA
601-650601DAILGNQMFT611HYDRAHIAQL621CEKAGLLQRA631LEHFTDLYDI641KRAVVHTHLL
651-700651NPEWLVNYFG661SLSVEDSLEC671LRAMLSANIR681QNLQICVQVA691SKYHEQLSTQ
701-750701SLIELFESFK711SFEGLFYFLG721SIVNFSQDPD731VHFKYIQAAC741KTGQIKEVER
751-800751ICRESNCYDP761ERVKNFLKEA771KLTDQLPLII781VCDRFDFVHD791LVLYLYRNNL
801-850801QKYIEIYVQK811VNPSRLPVVI821GGLLDVDCSE831DVIKNLILVV841RGQFSTDELV
851-900851AEVEKRNRLK861LLLPWLEARI871HEGCEEPATH881NALAKIYIDS891NNNPERFLRE
901-950901NPYYDSRVVG911KYCEKRDPHL921ACVAYERGQC931DLELINVCNE941NSLFKSLSRY
951-1000951LVRRKDPELW961GSVLLESNPY971RRPLIDQVVQ981TALSETQDPE991EVSVTVKAFM
1001-10501001TADLPNELIE1011LLEKIVLDNS1021VFSEHRNLQN1031LLILTAIKAD1041RTRVMEYINR
1051-11001051LDNYDAPDIA1061NIAISNELFE1071EAFAIFRKFD1081VNTSAVQVLI1091EHIGNLDRAY
1101-11501101EFAERCNEPA1111VWSQLAKAQL1121QKGMVKEAID1131SYIKADDPSS1141YMEVVQAANT
1151-12001151SGNWEELVKY1161LQMARKKARE1171SYVETELIFA1181LAKTNRLAEL1191EEFINGPNNA
1201-12501201HIQQVGDRCY1211DEKMYDAAKL1221LYNNVSNFGR1231LASTLVHLGE1241YQAAVDGARK
1251-13001251ANSTRTWKEV1261CFACVDGKEF1271RLAQMCGLHI1281VVHADELEEL1291INYYQDRGYF
1301-13501301EELITMLEAA1311LGLERAHMGM1321FTELAILYSK1331FKPQKMREHL1341ELFWSRVNIP
1351-14001351KVLRAAEQAH1361LWAELVFLYD1371KYEEYDNAII1381TMMNHPTDAW1391KEGQFKDIIT
1401-14501401KVANVELYYR1411AIQFYLEFKP1421LLLNDLLMVL1431SPRLDHTRAV1441NYFSKVKQLP
1451-15001451LVKPYLRSVQ1461NHNNKSVNES1471LNNLFITEED1481YQALRTSIDA1491YDNFDNISLA
1501-15501501QRLEKHELIE1511FRRIAAYLFK1521GNNRWKQSVE1531LCKKDSLYKD1541AMQYASESKD
1551-16001551TELAEELLQW1561FLQEEKRECF1571GACLFTCYDL1581LRPDVVLETA1591WRHNIMDFAM
1601-16501601PYFIQVMKEY1611LTKVDKLDAS1621ESLRKEEEQA1631TETQPIVYGQ1641PQLMLTAGPS
1651-16791651VAVPPQAPFG1661YGYTAPPYGQ1671PQPGFGYSM
Palmitoylation Sites Details
Position Sources Domains Experimental PMIDs
39 Prediction (Low) - -
155 Prediction (Medium) - -
221 Prediction (Low) - -
296 Prediction (Low) - -
440 Prediction (Medium) - -
463 Prediction (Low) - -
495 Prediction (Medium) - -
621 Prediction (Medium) - -
670 Prediction (Medium) - -
686 Prediction (Low) - -
740 Prediction (Medium) - -
757 Prediction (Low) - -
782 Prediction (Medium) - -
938 Prediction (Medium) - -
1261 Prediction (Medium) - -
1264 Prediction (Low) - -
1276 Prediction (Low) - -
1532 Prediction (Medium) - -
1569 Prediction (Low) - -
Conservation Scores
PhyloP
PhastCons
TCGA Cysteine Mutation Information

Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.

Position Amino Acid Change Frequency Type Function Cancer Type
176 R → C 0.007299 SNP Missense Mutation READ
294 Y → C 0.001887 SNP Missense Mutation UCEC
305 V → Cfs*6 0.002976 INS Frame Shift Ins KIRC
328 C → Ffs*9 0.002747 DEL Frame Shift Del LIHC
354 R → C 0.002506 SNP Missense Mutation COAD
655 F → C 0.001969 SNP Missense Mutation LGG
895 R → C 0.002506 SNP Missense Mutation COAD
903 R → C 0.002506 SNP Missense Mutation COAD
903 R → C 0.001887 SNP Missense Mutation UCEC
923 R → C 0.001887 SNP Missense Mutation UCEC
1189 F → C 0.001887 SNP Missense Mutation UCEC
1210 M → Cfs*52 0.002506 DEL Frame Shift Del COAD
1289 Y → C 0.002294 SNP Missense Mutation OV
1544 S → C 0.001764 SNP Missense Mutation LUAD
? ? → ? 0.001014 SNP Missense Mutation BRCA