Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| A0A087X2I1 | PSMC6 | 26S proteasome regulatory subunit 10B … | Homo sapiens (Human) | 403 aa |
Protein Details: A0A087X2I1 (PSMC6)
Protein Information
| Accession | A0A087X2I1 |
|---|---|
| Protein Names | 26S proteasome regulatory subunit 10B (26S proteasome AAA-ATPase subunit RPT4) (Proteasome 26S subunit ATPase 6) (Proteasome subunit p42) |
| Gene Symbol | PSMC6 |
| Organism | Homo sapiens (Human) |
| Length | 403 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31382980 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAIPGIPYER11RLLIMADPRD21KALQDYRKKL31LEHKEIDGRL41KELREQLKEL
51-10051TKQYEKSEND61LKALQSVGQI71VGEVLKQLTE81EKFIVKATNG91PRYVVGCRRQ
101-150101LDKSKLKPGT111RVALDMTTLT121IMRYLPREVD131PLVYNMSHED141PGNVSYSEIG
151-200151GLSEQIRELR161EVIELPLTNP171ELFQRVGIIP181PKGCLLYGPP191GTGKTLLARA
201-250201VASQLDCNFL211KVVSSSIVDK221YIGESARLIR231EMFNYARDHQ241PCIIFMDEID
251-300251AIGGRRFSEG261TSADREIQRT271LMELLNQMDG281FDTLHRVKMI291MATNRPDTLD
301-350301PALLRPGRLD311RKIHIDLPNE321QARLDILKIH331AGPITKHGEI341DYEAIVKLSD
351-400351GFNGADLRNV361CTEAGMFAIR371ADHDFVVQED381FMKAVRKVAD391SKKLESKLDY
401-403401KPV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 97 | - | - | - |
Deep-Palm: 0.97
|
|
| 184 | - | - | - |
Deep-Palm: 0.97
|
|
| 207 | - | - |
Unknown
(32651440)
|
Deep-Palm: 0.98
|
|
| 242 | - | - | - |
Deep-Palm: 0.23
|
|
| 361 | - | - | - |
Deep-Palm: 0.86
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
U937 cell
Specificity: 1.000
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 161 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 177 | G → C | 0.002427 | SNP | Missense Mutation | BLCA |
| 213 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 241 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 291 | R → C | 0.003460 | SNP | Missense Mutation | CESC |
| 356 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |