Search Database

Select Protein (1 found)

UniProt ID Gene Symbol Protein Name Organism Length Action
A0A0G2JJZ9 DDX39B RNA helicase (EC 3.6.4.13) Homo sapiens (Human) 328 aa

Protein Details: A0A0G2JJZ9 (DDX39B)

Protein Information
Accession A0A0G2JJZ9
Protein Names RNA helicase (EC 3.6.4.13)
Gene Symbol DDX39B
Organism Homo sapiens (Human)
Length 328 aa
Isoforms No isoforms
Related PMIDs 29575903 31251020
Database Sources CysModDB dbPTM SwissPalm
These studies detected palmitoylation of this protein in the samples.
Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
Bubble Size: Positive Samples Count Color Intensity: Positive Ratio
33
LNCaP cells
Specificity: 1.000
33/46 (71.7%)
0
Jurkat T cells
Specificity: 0.000
0/25 (0.0%)
0
U937 cells
Specificity: 0.000
0/1 (0.0%)
0
DU145 cells
Specificity: 0.000
0/2 (0.0%)
0
HeLa cells
Specificity: 0.000
0/1 (0.0%)
0
PC3 cells
Specificity: 0.000
0/4 (0.0%)
0
T cells
Specificity: 0.000
0/4 (0.0%)
0
HAP1 cells
Specificity: 0.000
0/10 (0.0%)
0
293T cells
Specificity: 0.000
0/10 (0.0%)
0
CEMx174 cells
Specificity: 0.000
0/3 (0.0%)
0
Endothelial cells
Specificity: 0.000
0/2 (0.0%)
0
Prefrontal cortex
Specificity: 0.000
0/1 (0.0%)
0
Cerebral cortex
Specificity: 0.000
0/4 (0.0%)
0
Liver membrane
Specificity: 0.000
0/1 (0.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID). The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples. Bars are grouped by tissue/cell line for easy comparison.
Protein Sequence
Single Types:
Experimental Database High Prediction Medium Prediction Low Prediction
Combined Types:
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
1-501MATLQQLEPV11TGQVSVLVMC21HTRELAFQIS31KEYERFSKYM41PNVKVAVFFG
51-10051GLSIKKDEEV61LKKNCPHIVV71GTPGRILALA81RNKSLNLKHI91KHFILDECDK
101-150101MLEQLDMRRD111VQEIFRMTPH121EKQVMMFSAT131LSKEIRPVCR141KFMQDPMEIF
151-200151VDDETKLTLH161GLQQYYVKLK171DNEKNRKLFD181LLDVLEFNQV191VIFVKSVQRC
201-250201IALAQLLVEQ211NFPAIAIHRG221MPQEERLSRY231QQFKDFQRRI241LVATNLFGRG
251-300251MDIERVNIAF261NYDMPEDSDT271YLHRVARAGR281FGTKGLAITF291VSDENDAKIL
301-328301NDVQDRFEVN311ISELPDEIDI321SSYIEQTR
Palmitoylation Sites Details
Position Sources Domains Experimental PMIDs
20 Prediction (Low) - -
65 Experimental CYSMODDB SWISSPALM DBPTM Prediction (Low) - 29575903
139 CYSMODDB SWISSPALM DBPTM Prediction (Low) - -
200 Prediction (Medium) - -
Conservation Scores
PhyloP
PhastCons
TCGA Cysteine Mutation Information

Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.

Position Amino Acid Change Frequency Type Function Cancer Type
216 R → C 0.001887 SNP Missense Mutation UCEC
250 F → C 0.002545 SNP Missense Mutation GBM
296 S → C 0.002020 SNP Missense Mutation PRAD