Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| A0A0R4J2F2 | CLDND1 | Claudin domain-containing protein 1 (Claudin-25) | Homo sapiens (Human) | 276 aa |
Protein Details: A0A0R4J2F2 (CLDND1)
Protein Information
| Accession | A0A0R4J2F2 |
|---|---|
| Protein Names | Claudin domain-containing protein 1 (Claudin-25) |
| Gene Symbol | CLDND1 |
| Organism | Homo sapiens (Human) |
| Length | 276 aa |
| Isoforms | No isoforms |
| Related PMIDs | 19801377 31251020 36430497 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGGDRLENKT11SVSVASWSSL21NARMDNRFAT31AFVIACVLSL41ISTIYMAASI
51-10051GTDFWYEYRS61PVQENSSDLN71KSIWDEFISD81EADEKTYNDA91LFRYNGTVGL
101-150101WRRCITIPKN111MHWYSPPERT121ESFDVVTKCV131SFTLTEQFME141KFVDPGNHNS
151-200151GIDLLRTYLW161RCQFLLPFVS171LGLMCFGALI181GLCACICRSL191YPTIATGILH
201-250201LLAGLCTLGS211VSCYVAGIEL221LHQKLELPDN231VSGEFGWSFC241LACVSAPLQF
251-276251MASALFIWAA261HTNRKEYTLM271KAYRVA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 36 | Claudin domain-containing protein 1 | - | - |
GPS-Palm: 0.68
Deep-Palm: 0.56
|
|
| 104 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.27
|
|
| 129 | - | - | - |
Deep-Palm: 0.66
|
|
| 162 | - | - | - |
Deep-Palm: 0.66
|
|
| 175 | - | - | - |
Deep-Palm: 0.80
|
|
| 183 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.96
|
|
| 185 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.88
|
|
| 187 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.97
|
|
| 206 | - | - | - |
Deep-Palm: 0.95
|
|
| 213 | - | - | - |
Deep-Palm: 0.96
|
|
| 240 | - | - | - |
Deep-Palm: 0.60
|
|
| 243 | - | - | - |
Deep-Palm: 0.26
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
cerebral cortex
Specificity: 0.571
4/4 (100.0%)
2
LNCaP
Specificity: 0.286
2/2 (100.0%)
1
DU145 cell
Specificity: 0.143
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.