Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| A0A7I2V5M1 | HSPD1 | 60 kDa heat shock protein, … | Homo sapiens (Human) | 375 aa |
Protein Details: A0A7I2V5M1 (HSPD1)
Protein Information
| Accession | A0A7I2V5M1 |
|---|---|
| Protein Names | 60 kDa heat shock protein, mitochondrial (EC 5.6.1.7) (60 kDa chaperonin) (Chaperonin 60) (Heat shock protein 60) |
| Gene Symbol | HSPD1 |
| Organism | Homo sapiens (Human) |
| Length | 375 aa |
| Isoforms | No isoforms |
| Related PMIDs | 21076176 22496122 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MLRLPTVFRQ11MRPVSRVLAP21HLTRAYAKDV31KFGADARALM41LQGVDLLADA
51-10051VAVTMGPKGR61TVIIEQSWGS71PKVTKDGVTV81AKSIDLKDKY91KNIGAKLVQD
101-150101VANNTNEEAG111DGTTTATVLA121RSIAKEGFEK131ISKGANPVEI141RRGVMLAVDA
151-200151VIAELKKQSK161PVTTPEEIAQ171VATISANGDK181EIGNIISDAM191KKVGRKGVIT
201-250201VKDGKTLNDE211LEIIEGMKFD221RGYISPYFIN231TSKGQKCEFQ241DAYVLLSEKK
251-300251ISSIQSIVPA261LEIANAHRKP271LVIIAEDVDG281EALSTLVLNR291LKVGLQVVAV
301-350301KAPGFGDNRK311NQLKDMAIAT321GGATGCLDLS331PRLECSGTIL341AYCNLHLLGS
351-375351SNPPVSASQV361AGTTGVWRRG371IDPES
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 237 | - | - |
LNCaP
(31251020)
Unknown
(32651440)
|
Deep-Palm: 0.55
|
|
| 326 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.96
|
|
| 335 | - | - | - |
Deep-Palm: 0.94
|
|
| 343 | - | - | - |
Deep-Palm: 0.82
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
1
Jurkat T cell
Specificity: 0.333
1/1 (100.0%)
1
EC cell
Specificity: 0.333
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
LNCaP cells (Mass)
Specificity: 0.333
1/4 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 362 | G → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 370 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 370 | R → C | 0.002020 | SNP | Missense Mutation | PRAD |
| 370 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |