Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| A2AIR7 | Cacna1b | Voltage-dependent N-type calcium channel subunit … | Mus musculus (Mouse) | 2328 aa |
Protein Details: A2AIR7 (Cacna1b)
Protein Information
| Accession | A2AIR7 |
|---|---|
| Protein Names | Voltage-dependent N-type calcium channel subunit alpha |
| Gene Symbol | Cacna1b |
| Organism | Mus musculus (Mouse) |
| Length | 2328 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVRFGDELGG11RYGGTGGGER21ARGGGAGGAG31GPGQGGLPPG41QRVLYKQSIA
51-10051QRARTMALYN61PIPVKQNCFT71VNRSLFVFSE81DNVVRKYAKR91ITEWPPFEYM
101-150101ILATIIANCI111VLALEQHLPD121GDKTPMSERL131DDTEPYFIGI141FCFEAGIKII
151-200151ALGFVFHKGS161YLRNGWNVMD171FVVVLTGILA181TAGTDFDLRT191LRAVRVLRPL
201-250201KLVSGIPSLQ211VVLKSIMKAM221VPLLQIGLLL231FFAILMFAII241GLEFYMGKFH
251-300251KACFPNSTDT261EPVGDFPCGK271DPPARQCDGD281TECREYWPGP291NFGITNFDNI
301-350301LFAILTVFQC311ITMEGWTDIL321YNTNDAAGNT331WNWLYFIPLI341IIGSFFMLNL
351-400351VLGVLSGEFA361KERERVENRR371AFLKLRRQQQ381IERELNGYLE391WIFKAEEVML
401-450401AEEDKNAEEK411SPLDAVLKRA421ATKKSRNDLI431HAEEGEDRFV441DLCAVGSPFA
451-500451RASLKSGKTE461SSSYFRRKEK471MFRFFIRRMV481KAQSFYWVVL491CVVALNTLCV
501-550501AMVHYNQPQR511LTTALYFAEF521VFLGLFLTEM531SLKMYGLGPR541SYFRSSFNCF
551-600551DFGVIVGSIF561EVVWAAIKPG571TSFGISVLRA581LRLLRIFKVT591KYWNSLRNLV
601-650601VSLLNSMKSI611ISLLFLLFLF621IVVFALLGMQ631LFGGQFNFQD641ETPTTNFDTF
651-700651PAAILTVFQI661LTGEDWNAVM671YHGIESQGGV681SKGMFSSFYF691IVLTLFGNYT
701-750701LLNVFLAIAV711DNLANAQELT721KDEEEMEEAA731NQKLALQKAK741EVAEVSPMSA
751-800751ANISIAARQQ761NSAKARSVWE771QRASQLRLQN781LRASCEALYS791EMDPEERLRY
801-850801ASTRHVRPDM811KTHMDRPLVV821EPGRDGLRGP831VGSKSKPEGT841EATESADLPR
851-900851RHHRHRDRDK861TSATAPAGGE871QDRTESTETG881AREERARPRR891SHSKETPGAD
901-950901TQVRCERSRR911HHRRGSPEEA921TEREPRRHRA931HRHAQDSSKE941GTAPVLVPKG
951-1000951ERRARHRGPR961TGPREAENNE971EPTRRHRARH981KVPPTLQPPE991REAAEKESNA
1001-10501001VEGDKETRNH1011QPKEPHCDLE1021AIAVTGVGPL1031HMLPSTCLQK1041VDEQPEDADN
1051-11001051QRNVTRMGSQ1061PSDPSTTVHV1071PVTLTGPPGE1081TPVVPSGNMN1091LEGQAEGKKE
1101-11501101AEADDVLRRG1111PRPIVPYSSM1121FCLSPTNLLR1131RFCHYIVTMR1141YFEMVILVVI
1151-12001151ALSSIALAAE1161DPVRTDSFRN1171NALKYMDYIF1181TGVFTFEMVI1191KMIDLGLLLH
1201-12501201PGAYFRDLWN1211ILDFIVVSGA1221LVAFAFSSFM1231GGSKGKDINT1241IKSLRVLRVL
1251-13001251RPLKTIKRLP1261KLKAVFDCVV1271NSLKNVLNIL1281IVYMLFMFIF1291AVIAVQLFKG
1301-13501301KFFYCTDESK1311ELERDCRGQY1321LDYEKEEVEA1331QPRQWKKYDF1341HYDNVLWALL
1351-14001351TLFTVSTGEG1361WPMVLKHSVD1371ATYEEQGPSP1381GFRMELSIFY1391VVYFVVFPFF
1401-14501401FVNIFVALII1411ITFQEQGDKV1421MSECSLEKNE1431RACIDFAISA1441KPLTRYMPQN
1451-15001451KQSFQYKTWT1461FVVSPPFEYF1471IMAMIALNTV1481VLMMKFYDAP1491YEYELMLKCL
1501-15501501NIVFTSMFSM1511ECILKIIAFG1521VLNYFRDAWN1531VFDFVTVLGS1541ITDILVTEIA
1551-16001551NNFINLSFLR1561LFRAARLIKL1571LRQGYTIRIL1581LWTFVQSFKA1591LPYVCLLIAM
1601-16501601LFFIYAIIGM1611QVFGNIALDD1621DTSINRHNNF1631RTFLQALMLL1641FRSATGEAWH
1651-17001651EIMLSCLGNR1661ACDPHANASE1671CGSDFAYFYF1681VSFIFLCSFL1691MLNLFVAVIM
1701-17501701DNFEYLTRDS1711SILGPHHLDE1721FIRVWAEYDP1731AACGRISYND1741MFEMLKHMSP
1751-18001751PLGLGKKCPA1761RVAYKRLVRM1771NMPISNEDMT1781VHFTSTLMAL1791IRTALEIKLA
1801-18501801PAGTKQHQCD1811AELRKEISSV1821WANLPQKTLD1831LLVPPHKPDE1841MTVGKVYAAL
1851-19001851MIFDFYKQNK1861TTRDQTHQAP1871GGLSQMGPVS1881LFHPLKATLE1891QTQPAVLRGA
1901-19501901RVFLRQKSAT1911SLSNGGAIQT1921QESGIKESLS1931WGTQRTQDAL1941YEARAPLERG
1951-20001951HSAEIPVGQS1961GTLAVDVQMQ1971NMTLRGPDGE1981PQPGLESQGR1991AASMPRLAAE
2001-20502001TQPAPNASPM2011KRSISTLAPR2021PHGTQLCSTV2031LDRPPPSQAS2041HHHHHRCHRR
2051-21002051RDKKQRSLEK2061GPSLSVDPEG2071APSTAAGPGL2081PHGEGSTACR2091RDRKQERGRS
2101-21502101QERRQPSSSS2111SEKQRFYSCD2121RFGSREPPQL2131MPSLSSHPTS2141PTAALEPAPH
2151-22002151PQGSGSVNGS2161PLMSTSGAST2171PGRGGRRQLP2181QTPLTPRPSI2191TYKTANSSPV
2201-22502201HFAEGQSGLP2211AFSPGRLSRG2221LSEHNALLQK2231EPLSQPLAPG2241SRIGSDPYLG
2251-23002251QRLDSEASAH2261TLPEDTLTFE2271EAVATNSGRS2281SRTSYVSSLT2291SQSHPLRRVP
2301-23282301NGYHCTLGLS2311TGVRARHSYH2321HPDQDHWC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 68 | - | - |
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.22
|
|
| 109 | - | - | - |
Deep-Palm: 0.29
|
|
| 142 | - | - | - |
Deep-Palm: 0.28
|
|
| 253 | - | - | - |
Deep-Palm: 0.25
|
|
| 268 | - | - | - |
Deep-Palm: 0.16
|
|
| 277 | - | - | - |
Deep-Palm: 0.07
|
|
| 283 | - | - | - |
Deep-Palm: 0.09
|
|
| 310 | - | - | - |
Deep-Palm: 0.04
|
|
| 443 | - | - | - |
Deep-Palm: 0.95
|
|
| 491 | - | - | - |
Deep-Palm: 0.08
|
|
| 499 | - | - | - |
Deep-Palm: 0.10
|
|
| 549 | - | - | - |
Deep-Palm: 0.17
|
|
| 785 | - | - | - |
Deep-Palm: 0.97
|
|
| 905 | - | - | - |
Deep-Palm: 0.82
|
|
| 1017 | - | - | - |
Deep-Palm: 0.48
|
|
| 1037 | - | - | - |
Deep-Palm: 0.79
|
|
| 1122 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.94
Deep-Palm: 0.84
|
| 1133 | - | - | - |
Deep-Palm: 0.24
|
|
| 1268 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.96
|
|
| 1305 | - | - | - |
Deep-Palm: 0.45
|
|
| 1316 | - | - | - |
Deep-Palm: 0.45
|
|
| 1424 | - | - | - |
Deep-Palm: 0.70
|
|
| 1433 | - | - | - |
Deep-Palm: 0.71
|
|
| 1499 | - | - | - |
Deep-Palm: 0.04
|
|
| 1512 | - | - | - |
Deep-Palm: 0.04
|
|
| 1595 | - | - | - |
Deep-Palm: 0.24
|
|
| 1656 | - | - | - |
Deep-Palm: 0.52
|
|
| 1662 | - | - | - |
Deep-Palm: 0.15
|
|
| 1671 | - | - | - |
Deep-Palm: 0.13
|
|
| 1687 | - | - | - |
Deep-Palm: 0.03
|
|
| 1733 | - | - | - |
Deep-Palm: 0.11
|
|
| 1758 | - | - | - |
Deep-Palm: 0.84
|
|
| 1809 | - | - | - |
Deep-Palm: 0.96
|
|
| 2027 | - | - | - |
Deep-Palm: 0.86
|
|
| 2047 | - | - | - |
Deep-Palm: 0.23
|
|
| 2089 | - | - | - |
Deep-Palm: 0.93
|
|
| 2119 | - | - | - |
Deep-Palm: 0.65
|
|
| 2305 | - | - | - |
Deep-Palm: 0.78
|
|
| 2328 | - | - | - |
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Brain tissue (Mass)
Specificity: 1.000
2/56 (3.6%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.