Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| A2AIR9 | Cacna1b | Voltage-dependent N-type calcium channel subunit … | Mus musculus (Mouse) | 2325 aa |
Protein Details: A2AIR9 (Cacna1b)
Protein Information
| Accession | A2AIR9 |
|---|---|
| Protein Names | Voltage-dependent N-type calcium channel subunit alpha |
| Gene Symbol | Cacna1b |
| Organism | Mus musculus (Mouse) |
| Length | 2325 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVRFGDELGG11RYGGTGGGER21ARGGGAGGAG31GPGQGGLPPG41QRVLYKQSIA
51-10051QRARTMALYN61PIPVKQNCFT71VNRSLFVFSE81DNVVRKYAKR91ITEWPPFEYM
101-150101ILATIIANCI111VLALEQHLPD121GDKTPMSERL131DDTEPYFIGI141FCFEAGIKII
151-200151ALGFVFHKGS161YLRNGWNVMD171FVVVLTGILA181TAGTDFDLRT191LRAVRVLRPL
201-250201KLVSGIPSLQ211VVLKSIMKAM221VPLLQIGLLL231FFAILMFAII241GLEFYMGKFH
251-300251KACFPNSTDT261EPVGDFPCGK271DPPARQCDGD281TECREYWPGP291NFGITNFDNI
301-350301LFAILTVFQC311ITMEGWTDIL321YNTNDAAGNT331WNWLYFIPLI341IIGSFFMLNL
351-400351VLGVLSGEFA361KERERVENRR371AFLKLRRQQQ381IERELNGYLE391WIFKAEEVML
401-450401AEEDKNAEEK411SPLDVLKRAA421TKKSRNDLIH431AEEGEDRFVD441LCAVGSPFAR
451-500451ASLKSGKTES461SSYFRRKEKM471FRFFIRRMVK481AQSFYWVVLC491VVALNTLCVA
501-550501MVHYNQPQRL511TTALYFAEFV521FLGLFLTEMS531LKMYGLGPRS541YFRSSFNCFD
551-600551FGVIVGSIFE561VVWAAIKPGT571SFGISVLRAL581RLLRIFKVTK591YWNSLRNLVV
601-650601SLLNSMKSII611SLLFLLFLFI621VVFALLGMQL631FGGQFNFQDE641TPTTNFDTFP
651-700651AAILTVFQIL661TGEDWNAVMY671HGIESQGGVS681KGMFSSFYFI691VLTLFGNYTL
701-750701LNVFLAIAVD711NLANAQELTK721DEEEMEEAAN731QKLALQKAKE741VAEVSPMSAA
751-800751NISIAARQQN761SAKARSVWEQ771RASQLRLQNL781RASCEALYSE791MDPEERLRYA
801-850801STRHVRPDMK811THMDRPLVVE821PGRDGLRGPV831GSKSKPEGTE841ATESADLPRR
851-900851HHRHRDRDKT861SATAPAGGEQ871DRTESTETGA881REERARPRRS891HSKETPGADT
901-950901QVRCERSRRH911HRRGSPEEAT921EREPRRHRAH931RHAQDSSKEG941TAPVLVPKGE
951-1000951RRARHRGPRT961GPREAENNEE971PTRRHRARHK981VPPTLQPPER991EAAEKESNAV
1001-10501001EGDKETRNHQ1011PKEPHCDLEA1021IAVTGVGPLH1031MLPSTCLQKV1041DEQPEDADNQ
1051-11001051RNVTRMGSQP1061SDPSTTVHVP1071VTLTGPPGET1081PVVPSGNMNL1091EGQAEGKKEA
1101-11501101EADDVLRRGP1111RPIVPYSSMF1121CLSPTNLLRR1131FCHYIVTMRY1141FEMVILVVIA
1151-12001151LSSIALAAED1161PVRTDSFRNN1171ALKYMDYIFT1181GVFTFEMVIK1191MIDLGLLLHP
1201-12501201GAYFRDLWNI1211LDFIVVSGAL1221VAFAFSGSKG1231KDINTIKSLR1241VLRVLRPLKT
1251-13001251IKRLPKLKAV1261FDCVVNSLKN1271VLNILIVYML1281FMFIFAVIAV1291QLFKGKFFYC
1301-13501301TDESKELERD1311CRGQYLDYEK1321EEVEAQPRQW1331KKYDFHYDNV1341LWALLTLFTV
1351-14001351STGEGWPMVL1361KHSVDATYEE1371QGPSPGFRME1381LSIFYVVYFV1391VFPFFFVNIF
1401-14501401VALIIITFQE1411QGDKVMSECS1421LEKNERACID1431FAISAKPLTR1441YMPQNKQSFQ
1451-15001451YKTWTFVVSP1461PFEYFIMAMI1471ALNTVVLMMK1481FYDAPYEYEL1491MLKCLNIVFT
1501-15501501SMFSMECILK1511IIAFGVLNYF1521RDAWNVFDFV1531TVLGSITDIL1541VTEIAETNNF
1551-16001551INLSFLRLFR1561AARLIKLLRQ1571GYTIRILLWT1581FVQSFKALPY1591VCLLIAMLFF
1601-16501601IYAIIGMQVF1611GNIALDDDTS1621INRHNNFRTF1631LQALMLLFRS1641ATGEAWHEIM
1651-17001651LSCLGNRACD1661PHANASECGS1671DFAYFYFVSF1681IFLCSFLMLN1691LFVAVIMDNF
1701-17501701EYLTRDSSIL1711GPHHLDEFIR1721VWAEYDPAAC1731GRISYNDMFE1741MLKHMSPPLG
1751-18001751LGKKCPARVA1761YKRLVRMNMP1771ISNEDMTVHF1781TSTLMALIRT1791ALEIKLAPAG
1801-18501801TKQHQCDAEL1811RKEISSVWAN1821LPQKTLDLLV1831PPHKPDEMTV1841GKVYAALMIF
1851-19001851DFYKQNKTTR1861DQTHQAPGGL1871SQMGPVSLFH1881PLKATLEQTQ1891PAVLRGARVF
1901-19501901LRQKSATSLS1911NGGAIQTQES1921GIKESLSWGT1931QRTQDALYEA1941RAPLERGHSA
1951-20001951EIPVGQSGTL1961AVDVQMQNMT1971LRGPDGEPQP1981GLESQGRAAS1991MPRLAAETQP
2001-20502001APNASPMKRS2011ISTLAPRPHG2021TQLCSTVLDR2031PPPSQASHHH2041HHRCHRRRDK
2051-21002051KQRSLEKGPS2061LSVDPEGAPS2071TAAGPGLPHG2081EGSTACRRDR2091KQERGRSQER
2101-21502101RQPSSSSSEK2111QRFYSCDRFG2121SREPPQLMPS2131LSSHPTSPTA2141ALEPAPHPQG
2151-22002151SGSVNGSPLM2161STSGASTPGR2171GGRRQLPQTP2181LTPRPSITYK2191TANSSPVHFA
2201-22502201EGQSGLPAFS2211PGRLSRGLSE2221HNALLQKEPL2231SQPLAPGSRI2241GSDPYLGQRL
2251-23002251DSEASAHTLP2261EDTLTFEEAV2271ATNSGRSSRT2281SYVSSLTSQS2291HPLRRVPNGY
2301-23252301HCTLGLSTGV2311RARHSYHHPD2321QDHWC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 68 | - | - |
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.22
|
|
| 109 | - | - | - |
Deep-Palm: 0.29
|
|
| 142 | - | - | - |
Deep-Palm: 0.28
|
|
| 253 | - | - | - |
Deep-Palm: 0.25
|
|
| 268 | - | - | - |
Deep-Palm: 0.16
|
|
| 277 | - | - | - |
Deep-Palm: 0.07
|
|
| 283 | - | - | - |
Deep-Palm: 0.09
|
|
| 310 | - | - | - |
Deep-Palm: 0.04
|
|
| 442 | - | - | - |
Deep-Palm: 0.95
|
|
| 490 | - | - | - |
Deep-Palm: 0.08
|
|
| 498 | - | - | - |
Deep-Palm: 0.10
|
|
| 548 | - | - | - |
Deep-Palm: 0.17
|
|
| 784 | - | - | - |
Deep-Palm: 0.97
|
|
| 904 | - | - | - |
Deep-Palm: 0.82
|
|
| 1016 | - | - | - |
Deep-Palm: 0.48
|
|
| 1036 | - | - | - |
Deep-Palm: 0.79
|
|
| 1121 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.94
Deep-Palm: 0.84
|
| 1132 | - | - | - |
Deep-Palm: 0.24
|
|
| 1263 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.96
|
|
| 1300 | - | - | - |
Deep-Palm: 0.45
|
|
| 1311 | - | - | - |
Deep-Palm: 0.45
|
|
| 1419 | - | - | - |
Deep-Palm: 0.70
|
|
| 1428 | - | - | - |
Deep-Palm: 0.71
|
|
| 1494 | - | - | - |
Deep-Palm: 0.04
|
|
| 1507 | - | - | - |
Deep-Palm: 0.04
|
|
| 1592 | - | - | - |
Deep-Palm: 0.24
|
|
| 1653 | - | - | - |
Deep-Palm: 0.52
|
|
| 1659 | - | - | - |
Deep-Palm: 0.15
|
|
| 1668 | - | - | - |
Deep-Palm: 0.13
|
|
| 1684 | - | - | - |
Deep-Palm: 0.03
|
|
| 1730 | - | - | - |
Deep-Palm: 0.11
|
|
| 1755 | - | - | - |
Deep-Palm: 0.84
|
|
| 1806 | - | - | - |
Deep-Palm: 0.96
|
|
| 2024 | - | - | - |
Deep-Palm: 0.86
|
|
| 2044 | - | - | - |
Deep-Palm: 0.23
|
|
| 2086 | - | - | - |
Deep-Palm: 0.93
|
|
| 2116 | - | - | - |
Deep-Palm: 0.65
|
|
| 2302 | - | - | - |
Deep-Palm: 0.78
|
|
| 2325 | - | - | - |
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Brain tissue (Mass)
Specificity: 1.000
2/56 (3.6%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.