Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| A2AIS0 | Cacna1b | Voltage-dependent N-type calcium channel subunit … | Mus musculus (Mouse) | 2288 aa |
Protein Details: A2AIS0 (Cacna1b)
Protein Information
| Accession | A2AIS0 |
|---|---|
| Protein Names | Voltage-dependent N-type calcium channel subunit alpha |
| Gene Symbol | Cacna1b |
| Organism | Mus musculus (Mouse) |
| Length | 2288 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVRFGDELGG11RYGGTGGGER21ARGGGAGGAG31GPGQGGLPPG41QRVLYKQSIA
51-10051QRARTMALYN61PIPVKQNCFT71VNRSLFVFSE81DNVVRKYAKR91ITEWPPFEYM
101-150101ILATIIANCI111VLALEQHLPD121GDKTPMSERL131DDTEPYFIGI141FCFEAGIKII
151-200151ALGFVFHKGS161YLRNGWNVMD171FVVVLTGILA181TAGTDFDLRT191LRAVRVLRPL
201-250201KLVSGIPSLQ211VVLKSIMKAM221VPLLQIGLLL231FFAILMFAII241GLEFYMGKFH
251-300251KACFPNSTDT261EPVGDFPCGK271DPPARQCDGD281TECREYWPGP291NFGITNFDNI
301-350301LFAILTVFQC311ITMEGWTDIL321YNTNDAAGNT331WNWLYFIPLI341IIGSFFMLNL
351-400351VLGVLSGEFA361KERERVENRR371AFLKLRRQQQ381IERELNGYLE391WIFKAEEVML
401-450401AEEDKNAEEK411SPLDVLKRAA421TKKSRNDLIH431AEEGEDRFVD441LCAVGSPFAR
451-500451ASLKSGKTES461SSYFRRKEKM471FRFFIRRMVK481AQSFYWVVLC491VVALNTLCVA
501-550501MVHYNQPQRL511TTALYFAEFV521FLGLFLTEMS531LKMYGLGPRS541YFRSSFNCFD
551-600551FGVIVGSIFE561VVWAAIKPGT571SFGISVLRAL581RLLRIFKVTK591YWNSLRNLVV
601-650601SLLNSMKSII611SLLFLLFLFI621VVFALLGMQL631FGGQFNFQDE641TPTTNFDTFP
651-700651AAILTVFQIL661TGEDWNAVMY671HGIESQGGVS681KGMFSSFYFI691VLTLFGNYTL
701-750701LNVFLAIAVD711NLANAQELTK721DEEEMEEAAN731QKLALQKAKE741VAEVSPMSAA
751-800751NISIAAQQNS761AKARSVWEQR771ASQLRLQNLR781ASCEALYSEM791DPEERLRYAS
801-850801TRHVRPDMKT811HMDRPLVVEP821GRDGLRGPVG831SKSKPEGTEA841TESADLPRRH
851-900851HRHRDRDKTS861ATAPAGGEQD871RTESTETGAR881EERARPRRSH891SKETPGADTQ
901-950901VRCERSRRHH911RRGSPEEATE921REPRRHRAHR931HAQDSSKEGT941APVLVPKGER
951-1000951RARHRGPRTG961PREAENNEEP971TRRHRARHKV981PPTLQPPERE991AAEKESNAVE
1001-10501001GDKETRNHQP1011KEPHCDLEAI1021AVTGVGPLHM1031LPSTCLQKVD1041EQPEDADNQR
1051-11001051NVTRMGSQPS1061DPSTTVHVPV1071TLTGPPGETP1081VVPSGNMNLE1091GQAEGKKEAE
1101-11501101ADDVLRRGPR1111PIVPYSSMFC1121LSPTNLLRRF1131CHYIVTMRYF1141EMVILVVIAL
1151-12001151SSIALAAEDP1161VRTDSFRNNA1171LKYMDYIFTG1181VFTFEMVIKM1191IDLGLLLHPG
1201-12501201AYFRDLWNIL1211DFIVVSGALV1221AFAFSGSKGK1231DINTIKSLRV1241LRVLRPLKTI
1251-13001251KRLPKLKAVF1261DCVVNSLKNV1271LNILIVYMLF1281MFIFAVIAVQ1291LFKGKFFYCT
1301-13501301DESKELERDC1311RGQYLDYEKE1321EVEAQPRQWK1331KYDFHYDNVL1341WALLTLFTVS
1351-14001351TGEGWPMVLK1361HSVDATYEEQ1371GPSPGFRMEL1381SIFYVVYFVV1391FPFFFVNIFV
1401-14501401ALIIITFQEQ1411GDKVMSECSL1421EKNERACIDF1431AISAKPLTRY1441MPQNKQSFQY
1451-15001451KTWTFVVSPP1461FEYFIMAMIA1471LNTVVLMMKF1481YDAPYEYELM1491LKCLNIVFTS
1501-15501501MFSMECILKI1511IAFGVLNYFR1521DAWNVFDFVT1531VLGSITDILV1541TEIAETNNFI
1551-16001551NLSFLRLFRA1561ARLIKLLRQG1571YTIRILLWTF1581VQSFKALPYV1591CLLIAMLFFI
1601-16501601YAIIGMQVFG1611NIALDDDTSI1621NRHNNFRTFL1631QALMLLFRSA1641TGEAWHEIML
1651-17001651SCLGNRACDP1661HANASECGSD1671FAYFYFVSFI1681FLCSFLMLNL1691FVAVIMDNFE
1701-17501701YLTRDSSILG1711PHHLDEFIRV1721WAEYDPAACG1731RISYNDMFEM1741LKHMSPPLGL
1751-18001751GKKCPARVAY1761KRLVRMNMPI1771SNEDMTVHFT1781STLMALIRTA1791LEIKLAPADE
1801-18501801MTVGKVYAAL1811MIFDFYKQNK1821TTRDQTHQAP1831GGLSQMGPVS1841LFHPLKATLE
1851-19001851QTQPAVLRGA1861RVFLRQKSAT1871SLSNGGAIQT1881QESGIKESLS1891WGTQRTQDAL
1901-19501901YEARAPLERG1911HSAEIPVGQS1921GTLAVDVQMQ1931NMTLRGPDGE1941PQPGLESQGR
1951-20001951AASMPRLAAE1961TQPAPNASPM1971KRSISTLAPR1981PHGTQLCSTV1991LDRPPPSQAS
2001-20502001HHHHHRCHRR2011RDKKQRSLEK2021GPSLSVDPEG2031APSTAAGPGL2041PHGEGSTACR
2051-21002051RDRKQERGRS2061QERRQPSSSS2071SEKQRFYSCD2081RFGSREPPQL2091MPSLSSHPTS
2101-21502101PTAALEPAPH2111PQGSGSVNGS2121PLMSTSGAST2131PGRGGRRQLP2141QTPLTPRPSI
2151-22002151TYKTANSSPV2161HFAEGQSGLP2171AFSPGRLSRG2181LSEHNALLQK2191EPLSQPLAPG
2201-22502201SRIGSDPYLG2211QRLDSEASAH2221TLPEDTLTFE2231EAVATNSGRS2241SRTSYVSSLT
2251-22882251SQSHPLRRVP2261NGYHCTLGLS2271TGVRARHSYH2281HPDQDHWC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 68 | - | - |
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.22
|
|
| 109 | - | - | - |
Deep-Palm: 0.29
|
|
| 142 | - | - | - |
Deep-Palm: 0.28
|
|
| 253 | - | - | - |
Deep-Palm: 0.25
|
|
| 268 | - | - | - |
Deep-Palm: 0.16
|
|
| 277 | - | - | - |
Deep-Palm: 0.07
|
|
| 283 | - | - | - |
Deep-Palm: 0.09
|
|
| 310 | - | - | - |
Deep-Palm: 0.04
|
|
| 442 | - | - | - |
Deep-Palm: 0.95
|
|
| 490 | - | - | - |
Deep-Palm: 0.08
|
|
| 498 | - | - | - |
Deep-Palm: 0.10
|
|
| 548 | - | - | - |
Deep-Palm: 0.17
|
|
| 783 | - | - | - |
Deep-Palm: 0.97
|
|
| 903 | - | - | - |
Deep-Palm: 0.82
|
|
| 1015 | - | - | - |
Deep-Palm: 0.48
|
|
| 1035 | - | - | - |
Deep-Palm: 0.79
|
|
| 1120 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.94
Deep-Palm: 0.84
|
| 1131 | - | - | - |
Deep-Palm: 0.24
|
|
| 1262 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.96
|
|
| 1299 | - | - | - |
Deep-Palm: 0.45
|
|
| 1310 | - | - | - |
Deep-Palm: 0.45
|
|
| 1418 | - | - | - |
Deep-Palm: 0.70
|
|
| 1427 | - | - | - |
Deep-Palm: 0.71
|
|
| 1493 | - | - | - |
Deep-Palm: 0.04
|
|
| 1506 | - | - | - |
Deep-Palm: 0.04
|
|
| 1591 | - | - | - |
Deep-Palm: 0.24
|
|
| 1652 | - | - | - |
Deep-Palm: 0.52
|
|
| 1658 | - | - | - |
Deep-Palm: 0.15
|
|
| 1667 | - | - | - |
Deep-Palm: 0.13
|
|
| 1683 | - | - | - |
Deep-Palm: 0.03
|
|
| 1729 | - | - | - |
Deep-Palm: 0.11
|
|
| 1754 | - | - | - |
Deep-Palm: 0.84
|
|
| 1987 | - | - | - |
Deep-Palm: 0.86
|
|
| 2007 | - | - | - |
Deep-Palm: 0.23
|
|
| 2049 | - | - | - |
Deep-Palm: 0.93
|
|
| 2079 | - | - | - |
Deep-Palm: 0.65
|
|
| 2265 | - | - | - |
Deep-Palm: 0.78
|
|
| 2288 | - | - | - |
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Brain tissue (Mass)
Specificity: 1.000
2/56 (3.6%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.