Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| B0YIW6 | ARCN1 | Coatomer subunit delta | Homo sapiens (Human) | 552 aa |
Protein Details: B0YIW6 (ARCN1)
Protein Information
| Accession | B0YIW6 |
|---|---|
| Protein Names | Coatomer subunit delta |
| Gene Symbol | ARCN1 |
| Organism | Homo sapiens (Human) |
| Length | 552 aa |
| Isoforms | No isoforms |
| Related PMIDs | 22496122 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAECNLVAIL11ISSIDNPLDK21NLDNGGNSCL31DFRPLNSFSQ41PQVLLAAAVC
51-10051TKAGKAIVSR61QFVEMTRTRI71EGLLAAFPKL81MNTGKQHTFV91ETESVRYVYQ
101-150101PMEKLYMVLI111TTKNSNILED121LETLRLFSRV131IPEYCRALEE141NEISEHCFDL
151-200151IFAFDEIVAL161GYRENVNLAQ171IRTFTEMDSH181EEKVFRAVRE191TQEREAKAEM
201-250201RRKAKELQQA211RRDAERQGKK221APGFGGFGSS231AVSGGSTAAM241ITETIIETDK
251-300251PKVAPAPARP261SGPSKALKLG271AKGKEVDNFV281DKLKSEGETI291MSSSMGKRTS
301-350301EATKMHAPPI311NMESVHMKIE321EKITLTCGRD331GGLQNMELHG341MIMLRISDDK
351-400351YGRIRLHVEN361EDKKGVQLQT371HPNVDKKLFT381AESLIGLKNP391EKSFPVNSDV
401-450401GVLKWRLQTT411EESFIPLTIN421CWPSESGNGC431DVNIEYELQE441DNLELNDVVI
451-500451TIPLPSGVGA461PVIGEIDGEY471RHDSRRNTLE481WCLPVIDAKN491KSGSLEFSIA
501-550501GQPNDFFPVQ511VSFVSKKNYC521NIQVTKVTQV531DGNSPVRFST541ETTFLVDKYE
551-552551IL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 4 | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.03
|
|
| 29 | - | - | - |
Deep-Palm: 0.83
|
|
| 50 | SWISSPALM DBPTM CYSMODDB | Coatomer delta subunit | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.96
|
| 135 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.96
|
|
| 147 | - | - | - |
Deep-Palm: 0.25
|
|
| 327 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.73
|
|
| 421 | - | - | - |
Deep-Palm: 0.08
|
|
| 430 | - | - | - |
Deep-Palm: 0.09
|
|
| 482 | - | - |
Unknown
(32651440)
|
GPS-Palm: 0.70
Deep-Palm: 0.94
|
|
| 520 | - | - | - |
Deep-Palm: 0.12
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
EC cell
Specificity: 1.000
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 153 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 160 | R → C | 0.005618 | SNP | Missense Mutation | PAAD |
| 161 | R → C | 0.002294 | SNP | Missense Mutation | OV |
| 314 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 381 | W → C | 0.002020 | SNP | Missense Mutation | PRAD |