Search Database

Select Protein (1 found)

UniProt ID Gene Symbol Protein Name Organism Length Action
B1ANR0 PABPC4 Polyadenylate-binding protein (PABP) Homo sapiens (Human) 615 aa

Protein Details: B1ANR0 (PABPC4)

Protein Information
AccessionB1ANR0
Protein NamesPolyadenylate-binding protein (PABP)
Gene SymbolPABPC4
OrganismHomo sapiens (Human)
Length615 aa
IsoformsNo isoforms
Related PMIDs No related PMIDs
Database SourcesCysModDBdbPTMSwissPalm
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
1-501MNAAASSYPM11ASLYVGDLHS21DVTEAMLYEK31FSPAGPVLSI41RVCRDMITRR
51-10051SLGYAYVNFQ61QPADAERALD71TMNFDVIKGK81PIRIMWSQRD91PSLRKSGVGN
101-150101VFIKNLDKSI111DNKALYDTFS121AFGNILSCKV131VCDENGSKGY141AFVHFETQEA
151-200151ADKAIEKMNG161MLLNDRKVFV171GRFKSRKERE181AELGAKAKEF191TNVYIKNFGE
201-250201EVDDESLKEL211FSQFGKTLSV221KVMRDPNGKS231KGFGFVSYEK241HEDANKAVEE
251-300251MNGKEISGKI261IFVGRAQKKV271ERQAELKRKF281EQLKQERISR291YQGVNLYIKN
301-350301LDDTIDDEKL311RKEFSPFGSI321TSAKVMLEDG331RSKGFGFVCF341SSPEEATKAV
351-400351TEMNGRIVGS361KPLYVALAQR371KEERKAHLTN381QYMQRVAGMR391ALPANAILNQ
401-450401FQPAAGGYFV411PAVPQAQGRP421PYYTPNQLAQ431MRPNPRWQQG441GRPQGFQGMP
451-500451SAIRQSGPRP461TLRHLAPTGV471PTAVQNLAPR481AAVAAAAPRA491VAPYKYASSV
501-550501RSPHPAIQPL511QAPQPAVHVQ521GQEPLTASML531AAAPPQEQKQ541MLGERLFPLI
551-600551QTMHSNLAGK561ITGMLLEIDN571SELLHMLESP581ESLRSKVDEA591VAVLQAHHAK
601-615601KEAAQKVGAV611AAATS
Palmitoylation Sites Details
Position Database Domains Literature (PMID/Cell-Tissue) Mass(PMID/Cell-Tissue) Prediction Scores
43 RNA BINDING PROTEIN Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain - -
GPS-Palm: 0.89
Deep-Palm: 0.86
128 SWISSPALM DBPTM CYSMODDB RNA recognition motif -
Unknown (32651440)
GPS-Palm: 0.79
Deep-Palm: 0.68
132 - - -
GPS-Palm: 0.69
Deep-Palm: 0.18
339 SWISSPALM DBPTM CYSMODDB RNA recognition motif - -
GPS-Palm: 0.82
Deep-Palm: 0.88
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information

Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.

Position Amino Acid Change Frequency Type Function Cancer Type
171 G → C 0.002294 SNP Missense Mutation OV
265 R → C 0.002141 SNP Missense Mutation SKCM
436 R → C 0.002288 SNP Missense Mutation STAD
463 R → C 0.002141 SNP Missense Mutation SKCM
509 R → C 0.002427 SNP Missense Mutation BLCA
509 R → C 0.005435 SNP Missense Mutation ESCA
530 R → C 0.002141 SNP Missense Mutation SKCM