Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| B1AWN6 | Scn2a | Sodium channel protein type 2 … | Mus musculus (Mouse) | 2006 aa |
Protein Details: B1AWN6 (Scn2a)
Protein Information
| Accession | B1AWN6 |
|---|---|
| Protein Names | Sodium channel protein type 2 subunit alpha (Voltage-gated sodium channel subunit alpha Nav1.2) |
| Gene Symbol | Scn2a |
| Organism | Mus musculus (Mouse) |
| Length | 2006 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAQSVLVPPG11PDSFRFFTRE21SLAAIEQRIA31EEKAKRPKQE41RKDEDDENGP
51-10051KPNSDLEAGK61SLPFIYGDIP71PEMVSEPLED81LDPYYINKKT91FIVLNKGKAI
101-150101SRFSATSALY111ILTPFNPIRK121LAIKILVHSL131FNVLIMCTIL141TNCVFMTMSN
151-200151PPDWTKNVEY161TFTGIYTFES171LIKILARGFC181LEDFTFLRDP191WNWLDFTVIT
201-250201FAYVTEFVNL211GNVSALRTFR221VLRALKTISV231IPGLKTIVGA241LIQSVKKLSD
251-300251VMILTVFCLS261VFALIGLQLF271MGNLRNKCLQ281WPPDNSTFEI291NITSFFNNSL
301-350301DWNGTAFNRT311MNMFNWDEYI321EDKSHFYFLE331GQNDALLCGN341SSDAGQCPEG
351-400351YICVKAGRNP361NYGYTSFDTF371SWAFLSLFRL381MTQDFWENLY391QLTLRAAGKT
401-450401YMIFFVLVIF411LGSFYLINLI421LAVVAMAYEE431QNQATLEEAE441QKEAEFQQML
451-500451EQLKKQQEEA461QAAAAAASAE471SRDFSGAGGI481GVFSESSSVA491SKLSSKSEKE
501-550501LKNRRKKKKQ511KEQAGEEEKE521DAVRKSASED531SIRKKGFRFS541LEGSRLTYEK
551-600551RFSSPHQSLL561SIRGSLFSPR571RNSRASLFSF581KGRVKDIGSE591NDFADDEHST
601-650601FEDNDSRRDS611LFVPHRHGER621RPSNVSQASR631ASRGIPTLPM641NGKMHSAVDC
651-700651NGVVSLVGGP661SALTSPVGQL671LPEGTTTETE681IRKRRSSSYH691VSMDLLEDPT
701-750701SRQRAMSMAS711ILTNTMEELE721ESRQKCPPCW731YKFANMCLIW741DCCKPWLKVK
751-800751HVVNLVVMDP761FVDLAITICI771VLNTLFMAME781HYPMTEQFSS791VLSVGNLVFT
801-850801GIFTAEMFLK811IIAMDPYYYF821QEGWNIFDGF831IVSLSLMELG841LANVEGLSVL
851-900851RSFRLLRVFK861LAKSWPTLNM871LIKIIGNSVG881ALGNLTLVLA891IIVFIFAVVG
901-950901MQLFGKSYKE911CVCKISNDCE921LPRWHMHDFF931HSFLIVFRVL941CGEWIETMWD
951-1000951CMEVAGQTMC961LTVFMMVMVI971GNLVVLNLFL981ALLLSSFSSD991NLAATDDDNE
1001-10501001MNNLQIAVGR1011MQKGIDFVKR1021KIREFIQKAF1031VRKQKALDEI1041KPLEDLNNKK
1051-11001051DSCISNHTTI1061EIGKDLNYLK1071DGNGTTSGIG1081SSVEKYVVDE1091SDYMSFINNP
1101-11501101SLTVTVPIAV1111GESDFENLNT1121EEFSSESDME1131ESKEKLNATS1141SSEGSTVDIG
1151-12001151APAEGEQPEA1161EPEESLEPEA1171CFTEDCVRKF1181KCCQISIEEG1191KGKLWWNLRK
1201-12501201TCYKIVEHNW1211FETFIVFMIL1221LSSGALAFED1231IYIEQRKTIK1241TMLEYADKVF
1251-13001251TYIFILEMLL1261KWVAYGFQMY1271FTNAWCWLDF1281LIVDVSLVSL1291TANALGYSEL
1301-13501301GAIKSLRTLR1311ALRPLRALSR1321FEGMRVVVNA1331LLGAIPSIMN1341VLLVCLIFWL
1351-14001351IFSIMGVNLF1361AGKFYHCINY1371TTGEMFDVSV1381VNNYSECQAL1391IESNQTARWK
1401-14501401NVKVNFDNVG1411LGYLSLLQVA1421TFKGWMDIMY1431AAVDSRNVEL1441QPKYEDNLYM
1451-15001451YLYFVIFIIF1461GSFFTLNLFI1471GVIIDNFNQQ1481KKKFGGQDIF1491MTEEQKKYYN
1501-15501501AMKKLGSKKP1511QKPIPRPANK1521FQGMVFDFVT1531KQVFDISIMI1541LICLNMVTMM
1551-16001551VETDDQSQEM1561TNILYWINLV1571FIVLFTGECV1581LKLISLRHYY1591FTIGWNIFDF
1601-16501601VVVILSIVGM1611FLAELIEKYF1621VSPTLFRVIR1631LARIGRILRL1641IKGAKGIRTL
1651-17001651LFALMMSLPA1661LFNIGLLLFL1671VMFIYAIFGM1681SNFAYVKREV1691GIDDMFNFET
1701-17501701FGNSMICLFQ1711ITTSAGWDGL1721LAPILNSGPP1731DCDPEKDHPG1741SSVKGDCGNP
1751-18001751SVGIFFFVSY1761IIISFLVVVN1771MYIAVILENF1781SVATEESAEP1791LSEDDFEMFY
1801-18501801EVWEKFDPDA1811TQFIEFCKLS1821DFAAALDPPL1831LIAKPNKVQL1841IAMDLPMVSG
1851-19001851DRIHCLDILF1861AFTKRVLGES1871GEMDALRIQM1881EERFMASNPS1891KVSYEPITTT
1901-19501901LKRKQEEVSA1911IVIQRAYRRY1921LLKQKVKKVS1931SIYKKDKGKE1941DEGTPIKEDI
1951-20001951ITDKLNENST1961PEKTDVTPST1971TSPPSYDSVT1981KPEKEKFEKD1991KSEKEDKGKD
2001-20062001IRESKK
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 137 | - | - | - |
Deep-Palm: 0.04
|
|
| 143 | - | - | - |
Deep-Palm: 0.03
|
|
| 180 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.55
|
|
| 258 | - | - | - |
Deep-Palm: 0.70
|
|
| 278 | - | - | - |
Deep-Palm: 0.26
|
|
| 338 | - | - | - |
Deep-Palm: 0.15
|
|
| 347 | - | - | - |
Deep-Palm: 0.11
|
|
| 353 | - | - | - |
Deep-Palm: 0.05
|
|
| 650 | - | - | - |
GPS-Palm: 0.67
Deep-Palm: 0.94
|
|
| 726 | - | - | - |
Deep-Palm: 0.15
|
|
| 729 | - | - | - |
Deep-Palm: 0.08
|
|
| 737 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.04
|
|
| 742 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.04
|
|
| 743 | - | - | - |
GPS-Palm: 0.67
Deep-Palm: 0.03
|
|
| 769 | - | - | - |
Deep-Palm: 0.03
|
|
| 911 | - | - | - |
Deep-Palm: 0.08
|
|
| 913 | - | - | - |
Deep-Palm: 0.03
|
|
| 919 | - |
brain
(39008777)
|
Brain
(35358180)
|
Deep-Palm: 0.03
|
|
| 941 | - | - | - |
GPS-Palm: 0.68
Deep-Palm: 0.05
|
|
| 951 | - | - | - |
Deep-Palm: 0.06
|
|
| 960 | - | - | - |
Deep-Palm: 0.03
|
|
| 1053 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.68
Deep-Palm: 0.48
|
| 1171 | - | - | - |
GPS-Palm: 0.67
Deep-Palm: 0.84
|
|
| 1176 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.70
|
|
| 1182 | SWISSPALM DBPTM CYSMODDB | Sodium ion transport-associated |
Forebrain
(28680068)
|
Brain
(35358180)
|
GPS-Palm: 0.90
Deep-Palm: 0.45
|
| 1183 | SWISSPALM DBPTM CYSMODDB | Sodium ion transport-associated |
Forebrain
(28680068)
|
Brain
(35358180)
|
GPS-Palm: 0.94
Deep-Palm: 0.48
|
| 1202 | - | - | - |
Deep-Palm: 0.28
|
|
| 1276 | - | - | - |
Deep-Palm: 0.07
|
|
| 1345 | - | - | - |
Deep-Palm: 0.76
|
|
| 1367 | - | - | - |
Deep-Palm: 0.05
|
|
| 1387 | - | - | - |
Deep-Palm: 0.13
|
|
| 1543 | - | - | - |
Deep-Palm: 0.03
|
|
| 1579 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.11
|
|
| 1707 | - | - | - |
Deep-Palm: 0.08
|
|
| 1732 | - | - | - |
Deep-Palm: 0.79
|
|
| 1747 | - | - | - |
Deep-Palm: 0.30
|
|
| 1817 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.67
Deep-Palm: 0.86
|
|
| 1855 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.70
Deep-Palm: 0.92
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
18
Brain tissue (Mass)
Specificity: 1.000
18/56 (32.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.