Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| B2RR83 | Ythdc2 | 3'-5' RNA helicase YTHDC2 (EC … | Mus musculus (Mouse) | 1445 aa |
Protein Details: B2RR83 (Ythdc2)
Protein Information
| Accession | B2RR83 |
|---|---|
| Protein Names | 3'-5' RNA helicase YTHDC2 (EC 3.6.4.13) (Keen to exit meiosis leaving testes under-populated protein) (Ketu) (YTH domain-containing protein C2) (mYTHDC2) |
| Gene Symbol | Ythdc2 |
| Organism | Mus musculus (Mouse) |
| Length | 1445 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35477839 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSRPSSVSPR11PPAPSGGGTG21GGGGGSGGGG31GGGGGGPASC41GPGGGGRAKG
51-10051LKDIRIDEEV61KIAVNIALER71FRYGDQREME81FPSSLTSTER91AFIHRLSQSL
101-150101GLVSKSKGKG111ANRYLTVKKK121DGSETAHAMM131TCNLTHNTKH141AVRSLIQRFP
151-200151VTNKERTELL161PKTERGNVFA171VEAENREMSK181TSGRLNNGIP191QVPVKRGESE
201-250201FDSFRQSLPV211FEKQEEIVKI221IKENKVVLIV231GETGSGKTTQ241IPQFLLDDCF
251-300251KNGIPCRIFC261TQPRRLAAIA271VAERVAAERR281ERIGQTIGYQ291IRLESRVSPK
301-350301TLLTFCTNGV311LLRTLMAGDS321TLSTVTHVIV331DEVHERDRFS341DFLLTKLRDL
351-400351LQKHPTLKLI361LSSAALDVNL371FIRYFGSCPV381IYIQGRPFEV391KEMFLEDILR
401-450401TTGYTNKEML411KYKKEKQREE421KQQTTLTEWY431SAQENTFKPE441SQRQRAVASV
451-500451SEEYDLLDDG461GDAVFSQLTE471KDVNCLEPWL481IKEMDACLSD491IWLHKDVDAF
501-550501AQVFHLILTE511NVSVDYRHSE521TSATALMVAA531GRGFTSQVEQ541LISMGANVHS
551-600551KASNGWMALD561WAKHFGQTEI571VDLLESYSAS581LEFGNLDESS591LVQTNGNDLS
601-650601AEDRELLKAY611HHSFDDEKVD621LDLIMHLLYN631ICHSCDAGAI641LIFLPGYDEI
651-700651VGLRDRILFD661DKRFADNTHR671YQVFMLHSNM681QTSDQKKVLK691NPPAGVRKII
701-750701LSTNIAETSI711TVNDVVFVID721SGKVKEKSFD731ALNFVTMLKM741VWISKASAIQ
751-800751RKGRAGRCRP761GICFRLFSRL771RFQNMLEFQT781PELLRMPLQE791LCLHTKLLAP
801-850801VNCTIADFLM811KAPEPPPALI821VRNAVQMLKT831IDAMDAWEDL841TELGYHLADL
851-900851PVEPHLGKMV861LCAVVLKCLD871PILTIACTLA881YRDPFVLPTQ891ASQKRAAMLC
901-950901RKRFTAGTFS911DHMALLRAFQ921AWQKARSDGW931ERAFCEKNFL941SQATMEIIIG
951-1000951MRTQLLGQLR961ASGFVRARGG971GDIRDVNTNS981ENWAVVKAAL991VAGMYPNLVH
1001-10501001VDRENVILTG1011PKEKKVRFHP1021TSVLSQPQYK1031KIPPANGQAA1041AIQALPTDWL
1051-11001051IYDEMTRAHR1061IANIRCCSAV1071TPVTVLVFCG1081PARLASNALQ1091EPSSFRADGI
1101-11501101PNDSSDSEME1111DRTTANLAAL1121KLDEWLNFKL1131EPEAASLLLQ1141LRQKWHSLFL
1151-12001151RRMRAPSKPW1161SQVDEATIRA1171IIAVLSTEEQ1181SAGLQQPSGI1191GQRPRPMSSE
1201-12501201ELPLASSWRS1211NNSRKSTADT1221EFADGSTTGE1231RVLMKSPSPA1241LHPPQKYKDR
1251-13001251GILHPKRSTD1261DRSDQSSVKS1271TDSSSYPSPC1281ASPSPPSSGK1291GSKSPSPRPN
1301-13501301MPIRYFIMKS1311SNLRNLEISQ1321QKGIWSTTPS1331NERKLNRAFW1341ESSMVYLVFS
1351-14001351VQGSGHFQGF1361SRMSSEIGRE1371KSQDWGSAGL1381GGVFKVEWIR1391KESLPFQFAH
1401-14451401HLLNPWNDNK1411KVQISRDGQE1421LEPQVGEQLL1431QLWERLPLGE1441KTTSD
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 40 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.98
|
|
| 132 | - | - | - |
Deep-Palm: 0.43
|
|
| 249 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.41
|
|
| 256 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.74
|
|
| 260 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.85
|
|
| 306 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.95
|
|
| 378 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.79
|
|
| 475 | - | - | - |
Deep-Palm: 0.79
|
|
| 487 | - | - | - |
Deep-Palm: 0.25
|
|
| 632 | - | - | - |
Deep-Palm: 0.43
|
|
| 635 | - | - | - |
Deep-Palm: 0.29
|
|
| 758 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.96
|
|
| 763 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.94
|
|
| 792 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.87
|
|
| 803 | - | - | - |
Deep-Palm: 0.91
|
|
| 862 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.97
|
|
| 868 | - | - | - |
Deep-Palm: 0.92
|
|
| 877 | - | - | - |
GPS-Palm: 0.73
Deep-Palm: 0.95
|
|
| 900 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.87
|
|
| 935 | - | - | - |
Deep-Palm: 0.74
|
|
| 1066 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.55
|
|
| 1067 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.56
|
|
| 1079 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.91
|
|
| 1280 | - | - | - |
Deep-Palm: 0.78
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Testis
Specificity: 1.000
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.