Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| B4DT28 | HNRNPR | Heterogeneous nuclear ribonucleoprotein R (cDNA … | Homo sapiens (Human) | 494 aa |
Protein Details: B4DT28 (HNRNPR)
Protein Information
| Accession | B4DT28 |
|---|---|
| Protein Names | Heterogeneous nuclear ribonucleoprotein R (cDNA FLJ54544, highly similar to Heterogeneous nuclear ribonucleoprotein R) |
| Gene Symbol | HNRNPR |
| Organism | Homo sapiens (Human) |
| Length | 494 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MKTYRQREKQ11GSKVQESTKG21PDEAKIKVFV31GKIPRDLYED41ELVPLFEKAG
51-10051PIWDLRLMMD61PLSGQNRGYA71FITFCGKEAA81QEAVKLCDSY91EIRPGKHLGV
101-150101CISVANNRLF111VGSIPKNKTK121ENILEEFSKV131TEGLVDVILY141HQPDDKKKNR
151-200151GFCFLEYEDH161KSAAQARRRL171MSGKVKVWGN181VVTVEWADPV191EEPDPEVMAK
201-250201VKVLFVRNLA211TTVTEEILEK221SFSEFGKLER231VKKLKDYAFV241HFEDRGAAVK
251-300251AMDEMNGKEI261EGEEIEIVLA271KPPDKKRKER281QAARQASRST291AYEDYYYHPP
301-350301PRMPPPIRGR311GRGGGRGGYG321YPPDYYGYED331YYDDYYGYDY341HDYRGGYEDP
351-400351YYGYDDGYAV361RGRGGGRGGR371GAPPPPRGRG381APPPRGRAGY391SQRGAPLGPP
401-450401RGSRGGRGGP411AQQQRGRGSR421GSRGNRGGNV431GGKRKADGYN441QPDSKRRQTN
451-494451NQQNWGSQPI461AQQPLQQGGD471YSGNYGYNND481NQEFYQDTYG491QQWK
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 75 | SWISSPALM DBPTM CYSMODDB | RNA recognition motif | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.66
|
| 87 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.90
|
|
| 101 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.83
|
|
| 153 | SWISSPALM DBPTM CYSMODDB | RNA recognition motif | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.71
Deep-Palm: 0.67
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
LNCaP
Specificity: 0.600
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Cerebral Cortex (Mass)
Specificity: 0.400
2/4 (50.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 37 | G → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 232 | R → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 232 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 464 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |
| 483 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 559 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 583 | S → C | 0.012195 | SNP | Missense Mutation | MESO |