Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| B4DZB1 | N/A | 116 kDa U5 small nuclear … | Homo sapiens (Human) | 923 aa |
Protein Details: B4DZB1
Protein Information
| Accession | B4DZB1 |
|---|---|
| Protein Names | 116 kDa U5 small nuclear ribonucleoprotein component (U5 snRNP-specific protein, 116 kDa) |
| Gene Symbol | Not available |
| Organism | Homo sapiens (Human) |
| Length | 923 aa |
| Isoforms | No isoforms |
| Related PMIDs | 36430497 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDTDLYDEFG11NYIGPELDSD21EDDDELGRET31IVQEEDTQPL41TEPIIKPVKT
51-10051KKFTLMERTL61PVTVYEMDFL71ADLMDNSELI81RNVTLCGHLH91HGKTCFVDCL
101-150101IEQTHPEIRK111RYDQDLCYTD121ILFTEQERGV131GIKSTPVTVV141LPDTKGKSYL
151-200151FNIMDTPGHV161NFSDEVTAGL171RISDGVVLFI181DAAEGVMLNT191ERLIKHAVQE
201-250201RLAVTVCINK211IDRLILELKL221PPTDAYYKLR231HIVDEVNGLI241SMYSTDENLI
251-300251LSPLLGNVCF261SSSQYSICFT271LGSFAKIYAD281TFGDINYQEF291AKRLWGDIYF
301-350301NPKTRKFTKK311APTSSSQRSF321VEFILEPLYK331ILAQVVGDVD341TSLPRTLDEL
351-400351GIHLTKEELK361LNIRPLLRLV371CKKFFGEFTG381FVDMCVQHIP391SPKVGAKPKI
401-450401EHTYTGGVDS411DLGEAMSDRD421PDGPLMCHTT431KMYSTDDGVQ441FHAFGRVLSG
451-500451TIHAGQPVKV461LGENYTLEDE471EDSQICTVGR481LWISVARYHI491EVNRVPAGNW
501-550501VLIEGVDQPI511VKTATITEPR521GNEEAQIFRP531LKFNTTSVIK541IAVEPVNPSE
551-600551LPKMLDGLRK561VNKSYPSLTT571KVEESGQHVI581LGTGELYLDC591VMHDLRKMYS
601-650601EIDIKVADPV611VTFCETVVET621SSLKCFAETP631NKKNKITMIA641EPLEKGLAED
651-700651IENEVVQITW661NRKKLGEFFQ671TKYDWDLLAA681RSIWAFGPDA691TGPNILVDDT
701-750701LPSEVGKALL711GSVKDSIVQG721FQWGTREGPL731CDELIRNVKF741KILDAVVAQE
751-800751PLHRGGGQII761PTARRVVYSA771FLMATPRLME781PYYFVEVQAP791ADCVSAVYTV
801-850801LARRRGHVTQ811DAPIPGSPLY821TIKAFIPAID831SFGFETDLRT841HTQGQAFSLS
851-900851VFHHWQIVPG861DPLDKSIVIR871PLEPQPAPHL881AREFMIKTRR891RKGLSEDVSI
901-923901SKFFDDPMLL911ELAKQDVVLN921YPM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 86 | - | - | - |
Deep-Palm: 0.62
|
|
| 95 | - | - | - |
Deep-Palm: 0.47
|
|
| 99 | - | - | - |
Deep-Palm: 0.35
|
|
| 117 | - | - |
Unknown
(32651440)
|
Deep-Palm: 0.54
|
|
| 207 | - | - | - |
Deep-Palm: 0.97
|
|
| 259 | - | - | - |
Deep-Palm: 0.92
|
|
| 268 | - | - | - |
Deep-Palm: 0.55
|
|
| 371 | - | - | - |
Deep-Palm: 0.97
|
|
| 385 | - | - | - |
Deep-Palm: 0.56
|
|
| 427 | - | - | - |
Deep-Palm: 0.13
|
|
| 476 | - | - | - |
Deep-Palm: 0.89
|
|
| 590 | - | - | - |
Deep-Palm: 0.92
|
|
| 614 | - | - |
LNCaP
(31251020)
|
Deep-Palm: 0.76
|
|
| 625 | - | - | - |
Deep-Palm: 0.71
|
|
| 731 | - | - | - |
Deep-Palm: 0.91
|
|
| 793 | - | - | - |
Deep-Palm: 0.84
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
cerebral cortex
Specificity: 1.000
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.