Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| B4E2Q0 | ATP2C1 | Calcium-transporting ATPase (EC 7.2.2.10) | Homo sapiens (Human) | 953 aa |
Protein Details: B4E2Q0 (ATP2C1)
Protein Information
| Accession | B4E2Q0 |
|---|---|
| Protein Names | Calcium-transporting ATPase (EC 7.2.2.10) |
| Gene Symbol | ATP2C1 |
| Organism | Homo sapiens (Human) |
| Length | 953 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDSLLPPSRF11SYFKKYPLHA21IRRYLSTLRN31QRAEEQVARF41QKIPNGENET
51-10051MIPVLTSKKA61SELPVSEVAS71ILQADLQNGL81NKCEVSHRRA91FHGWNEFDIS
101-150101EDEPLWKKYI111SQFKNPLIML121LLASAVISVL131MHQFDDAVSI141TVAILIVVTV
151-200151AFVQEYRSEK161SLEELSKLVP171PECHCVREGK181LEHTLARDLV191PGDTVCLSVG
201-250201DRVPADLRLF211EAVDLSIDES221SLTGETTPCS231KVTAPQPAAT241NGDLASRSNI
251-300251AFMGTLVRCG261KAKGVVIGTG271ENSEFGEVFK281MMQAEEAPKT291PLQKSMDLLG
301-350301KQLSFYSFGI311IGIIMLVGWL321LGKDILEMFT331ISVSLAVAAI341PEGLPIVVTV
351-400351TLALGVMRMV361KKRAIVKKLP371IVETLGCCNV381ICSDKTGTLT391KNEMTVTHIF
401-450401TSDGLHAEVT411GVGYNQFGEV421IVDGDVVHGF431YNPAVSRIVE441AGCVCNDAVI
451-500451RNNTLMGKPT461EGALIALAMK471MGLDGLQQDY481IRKAEYPFSS491EQKWMAVKCV
501-550501HRTQQDRPEI511CFMKGAYEQV521IKYCTTYQSK531GQTLTLTQQQ541RDVYQQEKAR
551-600551MGSAGLRVLA561LASGPELGQL571TFLGLVGIID581PPRTGVKEAV591TTLIASGVSI
601-650601KMITGDSQET611AVAIASRLGL621YSKTSQSVSG631EEIDAMDVQQ641LSQIVPKVAV
651-700651FYRASPRHKM661KIIKSLQKNG671SVVAMTGDGV681NDAVALKAAD691IGVAMGQTGT
701-750701DVCKEAADMI711LVDDDFQTIM721SAIEEGKGIY731NNIKNFVRFQ741LSTSIAALTL
751-800751ISLATLMNFP761NPLNAMQILW771INIIMDGPPA781QSLGVEPVDK791DVIRKPPRNW
801-850801KDSILTKNLI811LKILVSSIII821VCGTLFVFWR831ELRDNVITPR841DTTMTFTCFV
851-900851FFDMFNALSS861RSQTKSVFEI871GLCSNRMFCY881AVLGSIMGQL891LVIYFPPLQK
901-950901VFQTESLSIL911DLLFLLGLTS921SVCIVAEIIK931KVERSREKIQ941KHVSSTSSSF
951-953951LEV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 83 | - | - | - |
GPS-Palm: 0.75
Deep-Palm: 0.69
|
|
| 173 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.98
|
|
| 175 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.98
|
|
| 196 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.98
|
|
| 229 | - | - | - |
Deep-Palm: 0.85
|
|
| 259 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.96
|
|
| 377 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.98
|
|
| 378 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.98
|
|
| 382 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.97
|
|
| 443 | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.85
Deep-Palm: 0.41
|
|
| 445 | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.85
Deep-Palm: 0.55
|
|
| 499 | - | - | - |
Deep-Palm: 0.12
|
|
| 511 | - | - | - |
Deep-Palm: 0.08
|
|
| 524 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.75
|
|
| 703 | - | - |
LNCaP
(31251020)
|
Deep-Palm: 0.89
|
|
| 822 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.87
|
|
| 848 | - | - | - |
Deep-Palm: 0.14
|
|
| 873 | SWISSPALM DBPTM CYSMODDB | Cation transporting ATPase C-terminus | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.87
|
| 879 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.54
|
|
| 923 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.98
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
LNCaP
Specificity: 0.500
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Cerebral Cortex (Mass)
Specificity: 0.333
2/4 (50.0%)
1
LNCaP cells (Mass)
Specificity: 0.167
1/4 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 143 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 195 | C → Vfs*4 | 0.001014 | DEL | Frame Shift Del | BRCA |
| 409 | C → C | 0.002506 | SNP | Silent | COAD |
| 490 | C → Y | 0.001969 | SNP | Missense Mutation | HNSC |
| 760 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 814 | C → C | 0.002288 | SNP | Silent | STAD |
| 972 | C → F | 0.001764 | SNP | Missense Mutation | LUAD |