Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| B7Z645 | SYNCRIP | Heterogeneous nuclear ribonucleoprotein Q (Synaptotagmin … | Homo sapiens (Human) | 464 aa |
Protein Details: B7Z645 (SYNCRIP)
Protein Information
| Accession | B7Z645 |
|---|---|
| Protein Names | Heterogeneous nuclear ribonucleoprotein Q (Synaptotagmin binding cytoplasmic RNA interacting protein) (Synaptotagmin binding, cytoplasmic RNA interacting protein, isoform CRA_b) |
| Gene Symbol | SYNCRIP |
| Organism | Homo sapiens (Human) |
| Length | 464 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MKTYRQREKQ11GTKVADSSKG21PDEAKIKALL31ERTGYTLDVT41TGQRKYGGPP
51-10051PDSVYSGQQP61SVGTEIFVGK71IPRDLFEDEL81VPLFEKAGPI91WDLRLMMDPL
101-150101TGLNRGYAFV111TFCTKEAAQE121AVKLYNNHEI131RSGKHIGVCI141SVANNRLFVG
151-200151SIPKSKTKEQ161ILEEFSKVTE171GLTDVILYHQ181PDDKKKNRGF191CFLEYEDHKT
201-250201AAQARRRLMS211GKVKVWGNVG221TVEWADPIED231PDPEVMAKVK241VLFVRNLANT
251-300251VTEEILEKAF261SQFGKLERVK271KLKDYAFIHF281DERDGAVKAM291EEMNGKDLEG
301-350301ENIEIVFAKP311PDQKRKERKA321QRQAAKNQMY331DDYYYYGPPH341MPPPTRGRGR
351-400351GGRGGYGYPP361DYYGYEDYYD371YYGYDYHNYR381GGYEDPYYGY391EDFQVGARGR
401-450401GGRGARGAAP411SRGRGAAPPR421GRAGYSQRGG431PGSARGVRGA441RGGAQQQRGR
451-464451GQGKGVEAGP461DLLQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 113 | SWISSPALM DBPTM CYSMODDB | RNA recognition motif | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.75
|
| 139 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.74
|
|
| 191 | SWISSPALM DBPTM CYSMODDB | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.71
Deep-Palm: 0.64
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Cerebral Cortex (Mass)
Specificity: 1.000
1/4 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 55 | S → delinsRRCI | 0.002033 | INS | In Frame Ins | LUSC |
| 229 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 229 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 229 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 276 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 304 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 358 | F → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 448 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 460 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 469 | Y → C | 0.002294 | SNP | Missense Mutation | OV |
| 548 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 548 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |