Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| D6RF23 | RACK1 | Small ribosomal subunit protein RACK1 | Homo sapiens (Human) | 101 aa |
Protein Details: D6RF23 (RACK1)
Protein Information
| Accession | D6RF23 |
|---|---|
| Protein Names | Small ribosomal subunit protein RACK1 |
| Gene Symbol | RACK1 |
| Organism | Homo sapiens (Human) |
| Length | 101 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 36430497 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MLWDLNEGKH11LYTLDGGDII21NALCFSPNRY31WLCAATGPSI41KIWDLEGKII
51-10051VDELKQEVIS61TSSKAEPPQC71TSLAWSADGQ81TLFAGYTDNL91VRVWQVTIGT
101-101101R
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 24 | SWISSPALM DBPTM CYSMODDB | WD40-repeat-containing domain superfamily WD40/YVTN repeat-like-containing domain superfamily WD domain G-beta repeat WD40 repeat Small ribosomal subunit protein RACK1-like |
HeLa
(29575903)
|
Unknown
(32651440)
|
GPS-Palm: 0.89
Deep-Palm: 0.59
|
| 33 | WD40-repeat-containing domain superfamily WD40/YVTN repeat-like-containing domain superfamily WD40 repeat Small ribosomal subunit protein RACK1-like | - |
cerebral cortex
(36430497)
Unknown
(32651440)
|
GPS-Palm: 0.85
Deep-Palm: 0.68
|
|
| 70 | - | - | - |
Deep-Palm: 0.85
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
cerebral cortex
Specificity: 0.571
4/4 (100.0%)
3
LNCaP
Specificity: 0.429
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.