Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| E9PLD0 | RAB1B | RAB1B, member RAS oncogene family | Homo sapiens (Human) | 169 aa |
Protein Details: E9PLD0 (RAB1B)
Protein Information
| Accession | E9PLD0 |
|---|---|
| Protein Names | RAB1B, member RAS oncogene family |
| Gene Symbol | RAB1B |
| Organism | Homo sapiens (Human) |
| Length | 169 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 32944167 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MNPEYDYLFK11LLLIGDSGVG21KSCLLLRFAD31DTYTESYIST41IGVDFKIRTI
51-10051ELDGKTIKLQ61IESYANVKQW71LQEIDRYASE81NVNKLLVGNK91SDLTTKKVVD
101-150101NTTAKEFADS111LGIPFLETSA121KNATNVEQAF131MTMAAEIKKR141MGPGAASGGE
151-169151RPNLKIDSTP161VKPAGGGCC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 23 | SWISSPALM DBPTM CYSMODDB | Ras family | - | - |
Deep-Palm: 0.98
|
| 168 | - | - | - |
Deep-Palm: 0.03
|
|
| 169 | - | - | - |
Deep-Palm: 0.03
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
4
PC3
Specificity: 0.667
4/4 (100.0%)
2
LNCaP
Specificity: 0.333
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 88 | Y → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 200 | C → Y | 0.002288 | SNP | Missense Mutation | STAD |
| 200 | C → S | 0.002033 | SNP | Missense Mutation | LUSC |