Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| E9Q649 | Gcnt4 | Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4 (EC 2.4.1.102) … | Mus musculus (Mouse) | 455 aa |
Protein Details: E9Q649 (Gcnt4)
Protein Information
| Accession | E9Q649 |
|---|---|
| Protein Names | Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4 (EC 2.4.1.102) (Core 2-branching enzyme 3) (Core2-GlcNAc-transferase 3) (C2GnT3) |
| Gene Symbol | Gcnt4 |
| Organism | Mus musculus (Mouse) |
| Length | 455 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31772009 34884899 35477839 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MKIFRCCFKY11TLQQKLFILL21LTLWLFSLLK31LLNVGRLLFP41QRDIYLVEYS
51-10051LSTSPFVRNR61FPESGDAARD71NVNCSGVYEH81EPLEIGKSLE91IRRRSIIDLE
101-150101DGDVVAMTSD111CDVYQTLRQY121HEKLVSREEE131DFPIAYSLVV141HKDAIMVERL
151-200151IRAIYNQHNL161YCIHYDLKSP171DTFKAAMNNL181AKCFPNIFIA191SKLETVEYAH
201-250201ISRLQADWNC211LSDLLKSSVQ221WKYVINLCGQ231DFPLKSNFEL241VTELKSLQGR
251-300251NMLETVRPPS261AKTERFTYHH271ELRQVPYDYM281KLPVKTNVSK291GAPPHNIQVF
301-350301VGSAYFVLSR311AFVKYIFNSS321LVEDFFAWSK331DTYSPDEHFW341ATLIRIPGIP
351-400351GGISSSSQDV361SDLQSKTRLV371KWFYYEGFLY381PNCTGSHLRS391VCIYGAAELR
401-450401WLLNEGHWFA411NKFDSKVDPI421LMKCLAEKLE431EQQRKLIALS441SEKFMTEGTR
451-455451QSHTL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 6 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.02
|
|
| 7 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.02
|
|
| 74 | - | - | - |
Deep-Palm: 0.82
|
|
| 111 | - | - | - |
Deep-Palm: 0.90
|
|
| 162 | - | - | - |
Deep-Palm: 0.32
|
|
| 183 | - | - | - |
Deep-Palm: 0.80
|
|
| 210 | - | - | - |
Deep-Palm: 0.85
|
|
| 228 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.62
|
|
| 383 | - | - | - |
Deep-Palm: 0.47
|
|
| 392 | - | - | - |
Deep-Palm: 0.80
|
|
| 424 | - | - | - |
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
2
Testis
Specificity: 0.500
2/2 (100.0%)
1
NSC
Specificity: 0.250
1/1 (100.0%)
1
Liver
Specificity: 0.250
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.