Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| F5GY55 | DDB1 | DNA damage-binding protein 1 | Homo sapiens (Human) | 1092 aa |
Protein Details: F5GY55 (DDB1)
Protein Information
| Accession | F5GY55 |
|---|---|
| Protein Names | DNA damage-binding protein 1 |
| Gene Symbol | DDB1 |
| Organism | Homo sapiens (Human) |
| Length | 1092 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 31382980 36430497 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSYNYVVTAQ11KPTAVNGCVT21GHFTSAEDLN31LLIAKNTRLE41IYVVTAEGLR
51-10051PVKEVGMYGK61IAVMELFRPK71GESKDLLFIL81TAKYNACILE91YKQSGESIDI
101-150101ITRAHGNVQD111RIGRPSETGI121IGIIDPECRM131IGLRLYDGLF141KVIPLDRDNK
151-200151ELKAFNIRLE161ELHVIDVKFL171YGCQAPTICF181VYQDPQGRHV191KTYEVSLREK
201-250201EFNKGPWKQE211NVEAEASMVI221AVPEPFGGAI231IIGQESITYH241NGDKYLAIAP
251-300251PIIKQSTIVC261HNRVDPNGSR271YLLGDMEGRL281FMLLLEKEEQ291MDGTVTLKDL
301-350301RVELLGETSI311AECLTYLDNG321VVFVGSRLGD331SQLVKLNVDS341NEQGSYVVAM
351-400351ETFTNLGPIV361DMCVVDLERQ371GQGQLVTCSG381AFKEGSLRII391RNGIGIHEHA
401-450401SIDLPGIKGL411WPLRSDPNRE421TDDTLVLSFV431GQTRVLMLNG441EEVEETELMG
451-500451FVDDQQTFFC461GNVAHQQLIQ471ITSASVRLVS481QEPKALVSEW491KEPQAKNISV
501-550501ASCNSSQVVV511AVGRALYYLQ521IHPQELRQIS531HTEMEHEVAC541LDITPLGDSN
551-600551GLSPLCAIGL561WTDISARILK571LPSFELLHKE581MLGGEIIPRS591ILMTTFESSH
601-650601YLLCALGDGA611LFYFGLNIET621GLLSDRKKVT631LGTQPTVLRT641FRSLSTTNVF
651-700651ACSDRPTVIY661SSNHKLVFSN671VNLKEVNYMC681PLNSDGYPDS691LALANNSTLT
701-750701IGTIDEIQKL711HIRTVPLYES721PRKICYQEVS731QCFGVLSSRI741EVQDTSGGTT
751-800751ALRPSASTQA761LSSSVSSSKL771FSSSTAPHET781SFGEEVEVHN791LLIIDQHTFE
801-850801VLHAHQFLQN811EYALSLVSCK821LGKDPNTYFI831VGTAMVYPEE841AEPKQGRIVV
851-900851FQYSDGKLQT861VAEKEVKGAV871YSMVEFNGKL881LASINSTVRL891YEWTTEKELR
901-950901TECNHYNNIM911ALYLKTKGDF921ILVGDLMRSV931LLLAYKPMEG941NFEEIARDFN
951-1000951PNWMSAVEIL961DDDNFLGAEN971AFNLFVCQKD981SAATTDEERQ991HLQEVGLFHL
1001-10501001GEFVNVFCHG1011SLVMQNLGET1021STPTQGSVLF1031GTVNGMIGLV1041TSLSESWYNL
1051-10921051LLDMQNRLNK1061VIKSVGKIEH1071SFHLEILSHR1081AEDRTSHRFH1091RR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 18 | WD40/YVTN repeat-like-containing domain superfamily | - | - |
Deep-Palm: 0.89
|
|
| 87 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.74
|
|
| 128 | SWISSPALM DBPTM CYSMODDB | RSE1/DDB1/CPSF1 first beta-propeller | - |
cerebral cortex
(36430497)
Unknown
(32651440)
|
Deep-Palm: 0.92
|
| 173 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.29
|
|
| 179 | - | - | - |
Deep-Palm: 0.22
|
|
| 260 | - | - | - |
Deep-Palm: 0.71
|
|
| 313 | - | - | - |
Deep-Palm: 0.98
|
|
| 363 | - | - | - |
Deep-Palm: 0.51
|
|
| 378 | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.77
Deep-Palm: 0.95
|
|
| 460 | - | - | - |
Deep-Palm: 0.17
|
|
| 503 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.90
|
|
| 540 | - | - | - |
Deep-Palm: 0.77
|
|
| 556 | - | - | - |
Deep-Palm: 0.96
|
|
| 604 | - | - | - |
Deep-Palm: 0.80
|
|
| 652 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.87
|
|
| 680 | - | - | - |
Deep-Palm: 0.67
|
|
| 725 | - | - | - |
Deep-Palm: 0.72
|
|
| 732 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.66
|
|
| 819 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.85
|
|
| 903 | - | - | - |
Deep-Palm: 0.23
|
|
| 977 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.64
|
|
| 1008 | - | - | - |
Deep-Palm: 0.33
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
cerebral cortex
Specificity: 0.400
4/4 (100.0%)
2
LNCaP
Specificity: 0.200
2/2 (100.0%)
1
U937 cell
Specificity: 0.100
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Cerebral Cortex (Mass)
Specificity: 0.300
3/4 (75.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 147 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 158 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 182 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |
| 313 | C → C | 0.001887 | SNP | Silent | UCEC |
| 323 | F → C | 0.007299 | SNP | Missense Mutation | READ |
| 327 | R → C | 0.001969 | SNP | Missense Mutation | HNSC |
| 327 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 613 | Y → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 642 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 655 | R → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 713 | R → C | 0.004283 | SNP | Missense Mutation | SKCM |
| 713 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 819 | C → C | 0.002141 | SNP | Silent | SKCM |
| 928 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 928 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 1047 | W → Cfs*15 | 0.002976 | INS | Frame Shift Ins | KIRC |