Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| F6UJC5 | DDX39B | DExD-box helicase 39B | Homo sapiens (Human) | 245 aa |
Protein Details: F6UJC5 (DDX39B)
Protein Information
| Accession | F6UJC5 |
|---|---|
| Protein Names | DExD-box helicase 39B |
| Gene Symbol | DDX39B |
| Organism | Homo sapiens (Human) |
| Length | 245 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 |
| Database Sources | CysModDB dbPTM SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
Bubble Size: Positive Samples Count
Color Intensity: Positive Ratio
33
LNCaP cells
Specificity: 1.000
33/46 (71.7%)
0
Jurkat T cells
Specificity: 0.000
0/25 (0.0%)
0
U937 cells
Specificity: 0.000
0/1 (0.0%)
0
DU145 cells
Specificity: 0.000
0/2 (0.0%)
0
HeLa cells
Specificity: 0.000
0/1 (0.0%)
0
PC3 cells
Specificity: 0.000
0/4 (0.0%)
0
T cells
Specificity: 0.000
0/4 (0.0%)
0
HAP1 cells
Specificity: 0.000
0/10 (0.0%)
0
293T cells
Specificity: 0.000
0/10 (0.0%)
0
CEMx174 cells
Specificity: 0.000
0/3 (0.0%)
0
Endothelial cells
Specificity: 0.000
0/2 (0.0%)
0
Prefrontal cortex
Specificity: 0.000
0/1 (0.0%)
0
Cerebral cortex
Specificity: 0.000
0/4 (0.0%)
0
Liver membrane
Specificity: 0.000
0/1 (0.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Bars are grouped by tissue/cell line for easy comparison.
Protein Sequence
Single Types:
Experimental Database High Prediction Medium Prediction Low Prediction
Experimental Database High Prediction Medium Prediction Low Prediction
Combined Types:
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
1-501MWTMSSWTMK11MMRWRQQLGE21MGLRPLPRRM31SRAPMSPSTA41LAFVTSCSSQ
51-10051SCSGPLSTVA61LSIRQKVAVF71FGGLSIKKDE81EVLKKNCPHI91VVGTPGRILA
101-150101LARNKSLNLK111HIKHFILDEC121DKMLEQLDMR131RDVQEIFRMT141PHEKQVMMFS
151-200151ATLSKEIRPV161CRKFMQDPME171IFVDDETKLT181LHGLQQYYVK191LKDNEKNRKL
201-245201FDLLDVLEFN211QVVIFVKSVQ221RCIALAQLLV231EQNFPAIAIH241RGMPQ
Palmitoylation Sites Details
| Position | Sources | Domains | Experimental PMIDs |
|---|---|---|---|
| 87 | CYSMODDB SWISSPALM DBPTM Prediction (Low) | - | - |
| 161 | CYSMODDB SWISSPALM DBPTM Prediction (Low) | - | - |
| 222 | Prediction (Medium) | - | - |
Conservation Scores
PhyloP
PhastCons
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 216 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 250 | F → C | 0.002545 | SNP | Missense Mutation | GBM |
| 296 | S → C | 0.002020 | SNP | Missense Mutation | PRAD |