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Select Protein (1 found)

UniProt ID Gene Symbol Protein Name Organism Length Action
F8W870 OLFM1 Olfactomedin 1 Homo sapiens (Human) 163 aa

Protein Details: F8W870 (OLFM1)

Protein Information
AccessionF8W870
Protein NamesOlfactomedin 1
Gene SymbolOLFM1
OrganismHomo sapiens (Human)
Length163 aa
IsoformsNo isoforms
Related PMIDs No related PMIDs
Database SourcesCysModDBdbPTMSwissPalm
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
1-501MEGPGGSGFH11LRLEAFCKCK21SPINVFDPVR31PALQVGLTRV41LPTNPEESWQ
51-10051VYSSAQDSEG61RCICTVVAPQ71QTMCSRDART81KQLRQLLEKV91QNMSQSIEVL
101-150101DRRTQRDLQY111VEKMENQMKG121LESKFKQVEE131SHKQHLARQF141KAIKAKMDEL
151-163151RPLIPVLEEY161KAD
Palmitoylation Sites Details
Position Database Domains Literature (PMID/Cell-Tissue) Mass(PMID/Cell-Tissue) Prediction Scores
17 SWISSPALM DBPTM CYSMODDB - - -
GPS-Palm: 0.73
Deep-Palm: 0.96
19 SWISSPALM DBPTM CYSMODDB - - -
GPS-Palm: 0.81
Deep-Palm: 0.93
62 - - -
Deep-Palm: 0.13
64 - - -
Deep-Palm: 0.22
74 - - -
GPS-Palm: 0.85
Deep-Palm: 0.92
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
TCGA Cysteine Mutation Information

Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.

Position Amino Acid Change Frequency Type Function Cancer Type
85 C → Y 0.002288 SNP Missense Mutation STAD
221 C → C 0.002288 SNP Silent STAD
227 C → C 0.001969 SNP Silent HNSC
272 R → C 0.002747 SNP Missense Mutation LIHC
293 R → C 0.001969 SNP Missense Mutation LGG
334 R → C 0.002288 SNP Missense Mutation STAD
347 Y → C 0.001014 SNP Missense Mutation BRCA
400 R → C 0.001887 SNP Missense Mutation UCEC
417 G → C 0.002506 SNP Missense Mutation COAD
426 Y → C 0.002506 SNP Missense Mutation COAD
481 R → C 0.002506 SNP Missense Mutation COAD
481 R → C 0.001887 SNP Missense Mutation UCEC
? ? → ? 0.001764 SNP Missense Mutation LUAD