Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| G3V0E5 | TFRC | Transferrin receptor protein 1 | Homo sapiens (Human) | 679 aa |
Protein Details: G3V0E5 (TFRC)
Protein Information
| Accession | G3V0E5 |
|---|---|
| Protein Names | Transferrin receptor protein 1 |
| Gene Symbol | TFRC |
| Organism | Homo sapiens (Human) |
| Length | 679 aa |
| Isoforms | No isoforms |
| Related PMIDs | 19137006 21076176 22496122 29575903 31251020 32651440 36430497 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MIGYLGYCKG11VEPKTECERL21AGTESPVREE31PGEDFPAARR41LYWDDLKRKL
51-10051SEKLDSTDFT61GTIKLLNENS71YVPREAGSQK81DENLALYVEN91QFREFKLSKV
101-150101WRDQHFVKIQ111VKDSAQNSVI121IVDKNGRLVY131LVENPGGYVA141YSKAATVTGK
151-200151LVHANFGTKK161DFEDLYTPVN171GSIVIVRAGK181ITFAEKVANA191ESLNAIGVLI
201-250201YMDQTKFPIV211NAELSFFGHA221HLGTGDPYTP231GFPSFNHTQF241PPSRSSGLPN
251-300251IPVQTISRAA261AEKLFGNMEG271DCPSDWKTDS281TCRMVTSESK291NVKLTVSNVL
301-350301KEIKILNIFG311VIKGFVEPDH321YVVVGAQRDA331WGPGAAKSGV341GTALLLKLAQ
351-400351MFSDMVLKDG361FQPSRSIIFA371SWSAGDFGSV381GATEWLEGYL391SSLHLKAFTY
401-450401INLDKAVLGT411SNFKVSASPL421LYTLIEKTMQ431NVKHPVTGQF441LYQDSNWASK
451-500451VEKLTLDNAA461FPFLAYSGIP471AVSFCFCEDT481DYPYLGTTMD491TYKELIERIP
501-550501ELNKVARAAA511EVAGQFVIKL521THDVELNLDY531ERYNSQLLSF541VRDLNQYRAD
551-600551IKEMGLSLQW561LYSARGDFFR571ATSRLTTDFG581NAEKTDRFVM591KKLNDRVMRV
601-650601EYHFLSPYVS611PKESPFRHVF621WGSGSHTLPA631LLENLKLRKQ641NNGAFNETLF
651-679651RNQLALATWT661IQGAANALSG671DVWDIDNEF
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 8 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.04
|
|
| 17 | - | - | - |
Deep-Palm: 0.93
|
|
| 272 | SWISSPALM DBPTM CYSMODDB | - |
HeLa
(29575903)
|
LNCaP
(31251020)
|
Deep-Palm: 0.90
|
| 282 | SWISSPALM DBPTM CYSMODDB | - |
HeLa
(29575903)
| - |
Deep-Palm: 0.60
|
| 475 | - | - | - |
Deep-Palm: 0.29
|
|
| 477 | - | - | - |
Deep-Palm: 0.18
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.364
4
LNCaP
Specificity: 0.333
4/4 (100.0%)
3
Jurkat T cell
Specificity: 0.250
3/3 (100.0%)
2
HeLa cell
Specificity: 0.167
2/2 (100.0%)
1
EC cell
Specificity: 0.083
1/1 (100.0%)
1
cerebral cortex
Specificity: 0.083
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
LNCaP cells (Mass)
Specificity: 0.083
1/4 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 152 | Y → C | 0.001969 | SNP | Missense Mutation | HNSC |
| 174 | R → C | 0.007299 | SNP | Missense Mutation | READ |
| 174 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 174 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 321 | F → delinsLEYVALILIC | 0.002294 | INS | In Frame Ins | OV |
| 338 | S → C | 0.001764 | SNP | Missense Mutation | LUAD |
| 646 | R → C | 0.002427 | SNP | Missense Mutation | BLCA |
| 719 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 719 | R → C | 0.005435 | SNP | Missense Mutation | ESCA |
| 719 | R → C | 0.003460 | SNP | Missense Mutation | CESC |