Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| H0Y9V7 | ATP2C1 | Calcium-transporting ATPase type 2C member … | Homo sapiens (Human) | 903 aa |
Protein Details: H0Y9V7 (ATP2C1)
Protein Information
| Accession | H0Y9V7 |
|---|---|
| Protein Names | Calcium-transporting ATPase type 2C member 1 (EC 7.2.2.10) (ATP-dependent Ca(2+) pump PMR1) (Ca(2+)/Mn(2+)-ATPase 2C1) (Secretory pathway Ca(2+)-transporting ATPase type 1) |
| Gene Symbol | ATP2C1 |
| Organism | Homo sapiens (Human) |
| Length | 903 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 31382980 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501XKCEVSHRRA11FHGWNEFDIS21EDEPLWKKYI31SQFKNPLIML41LLASAVISVL
51-10051MHQFDDAVSI61TVAILIVVTV71AFVQEYRSEK81SLEELSKLVP91PECHCVREGK
101-150101LEHTLARDLV111PGDTVCLSVG121DRVPADLRLF131EAVDLSIDES141SLTGETTPCS
151-200151KVTAPQPAAT161NGDLASRSNI171AFMGTLVRCG181KAKGVVIGTG191ENSEFGEVFK
201-250201MMQAEEAPKT211PLQKSMDLLG221KQLSFYSFGI231IGIIMLVGWL241LGKDILEMFT
251-300251ISVSLAVAAI261PEGLPIVVTV271TLALGVMRMV281KKRAIVKKLP291IVETLGCCNV
301-350301ICSDKTGTLT311KNEMTVTHIF321TSDGLHAEVT331GVGYNQFGEV341IVDGDVVHGF
351-400351YNPAVSRIVE361AGCVCNDAVI371RNNTLMGKPT381EGALIALAMK391MGLDGLQQDY
401-450401IRKAEYPFSS411EQKWMAVKCV421HRTQQDRPEI431CFMKGAYEQV441IKYCTTYQSK
451-500451GQTLTLTQQQ461RDVYQQEKAR471MGSAGLRVLA481LASGPELGQL491TFLGLVGIID
501-550501PPRTGVKEAV511TTLIASGVSI521KMITGDSQET531AVAIASRLGL541YSKTSQSVSG
551-600551EEIDAMDVQQ561LSQIVPKVAV571FYRASPRHKM581KIIKSLQKNG591SVVAMTGDGV
601-650601NDAVALKAAD611IGVAMGQTGT621DVCKEAADMI631LVDDDFQTIM641SAIEEGKGIY
651-700651NNIKNFVRFQ661LSTSIAALTL671ISLATLMNFP681NPLNAMQILW691INIIMDGPPA
701-750701QSLGVEPVDK711DVIRKPPRNW721KDSILTKNLI731LKILVSSIII741VCGTLFVFWR
751-800751ELRDNVITPR761DTTMTFTCFV771FFDMFNALSS781RSQTKSVFEI791GLCSNRMFCY
801-850801AVLGSIMGQL811LVIYFPPLQK821VFQTESLSIL831DLLFLLGLTS841SVCIVAEIIK
851-900851KVERSREKIQ861KHVSSTSSSF871LEVWLWERSG881QQLVEIHPHL891ETGLPLTEDV
901-903901SCV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 3 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.03
|
|
| 93 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.98
|
|
| 95 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.98
|
|
| 116 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.98
|
|
| 149 | - | - | - |
Deep-Palm: 0.85
|
|
| 179 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.96
|
|
| 297 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.98
|
|
| 298 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.98
|
|
| 302 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.97
|
|
| 363 | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.85
Deep-Palm: 0.41
|
|
| 365 | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.85
Deep-Palm: 0.55
|
|
| 419 | - | - | - |
Deep-Palm: 0.12
|
|
| 431 | - | - | - |
Deep-Palm: 0.08
|
|
| 444 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.75
|
|
| 623 | - | - |
LNCaP
(31251020)
|
Deep-Palm: 0.89
|
|
| 742 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.87
|
|
| 768 | - | - | - |
Deep-Palm: 0.14
|
|
| 793 | SWISSPALM DBPTM CYSMODDB | Cation transporting ATPase C-terminus | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.87
|
| 799 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.54
|
|
| 843 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.98
|
|
| 902 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.03
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.800
4
LNCaP
Specificity: 0.500
4/4 (100.0%)
1
U937 cell
Specificity: 0.125
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Cerebral Cortex (Mass)
Specificity: 0.250
2/4 (50.0%)
1
LNCaP cells (Mass)
Specificity: 0.125
1/4 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 143 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 195 | C → Vfs*4 | 0.001014 | DEL | Frame Shift Del | BRCA |
| 409 | C → C | 0.002506 | SNP | Silent | COAD |
| 490 | C → Y | 0.001969 | SNP | Missense Mutation | HNSC |
| 760 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 814 | C → C | 0.002288 | SNP | Silent | STAD |
| 972 | C → F | 0.001764 | SNP | Missense Mutation | LUAD |