Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| H0YAM7 | RACK1 | Small ribosomal subunit protein RACK1 | Homo sapiens (Human) | 247 aa |
Protein Details: H0YAM7 (RACK1)
Protein Information
| Accession | H0YAM7 |
|---|---|
| Protein Names | Small ribosomal subunit protein RACK1 |
| Gene Symbol | RACK1 |
| Organism | Homo sapiens (Human) |
| Length | 247 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 36430497 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGTTTRRFVG11HTKDVLSVAF21SSDNRQIVSG31SRDKTIKLWN41TLGVCKYTVQ
51-10051DESHSEWVSC61VRFSPNSSNP71IIVSCGWDKL81VKVWNLANCK91LKTNHIGHTG
101-150101YLNTVTVSPD111GSLCASGGKD121GQAMLWDLNE131GKHLYTLDGG141DIINALCFSP
151-200151NRYWLCAATG161PSIKIWDLEG171KIIVDELKQE181VISTSSKAEP191PQCTSLAWSA
201-247201DGQEYITTTY211KLAVEMRAVS221YSLPGVVAHA231YWRLRWEDLL241NCRGLRL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 45 | SWISSPALM DBPTM CYSMODDB | WD40-repeat-containing domain superfamily WD40/YVTN repeat-like-containing domain superfamily WD domain G-beta repeat WD40 repeat Small ribosomal subunit protein RACK1-like |
HeLa
(29575903)
|
Unknown
(32651440)
|
GPS-Palm: 0.88
Deep-Palm: 0.87
|
| 60 | - | - | - |
Deep-Palm: 0.13
|
|
| 75 | - | - |
cerebral cortex
(36430497)
Unknown
(32651440)
|
GPS-Palm: 0.86
Deep-Palm: 0.26
|
|
| 89 | - | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.94
Deep-Palm: 0.81
|
|
| 114 | - | - |
cerebral cortex
(36430497)
Unknown
(32651440)
|
GPS-Palm: 0.69
Deep-Palm: 0.78
|
|
| 147 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
HeLa
(29575903)
|
Unknown
(32651440)
|
GPS-Palm: 0.89
Deep-Palm: 0.59
|
| 156 | - | - |
cerebral cortex
(36430497)
Unknown
(32651440)
|
GPS-Palm: 0.85
Deep-Palm: 0.68
|
|
| 193 | - | - | - |
Deep-Palm: 0.57
|
|
| 242 | - | - | - |
GPS-Palm: 0.97
Deep-Palm: 0.04
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
cerebral cortex
Specificity: 0.400
4/4 (100.0%)
3
LNCaP
Specificity: 0.300
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Cerebral Cortex (Mass)
Specificity: 0.300
3/4 (75.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.