Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| H0YD13 | CD44 | CD44 antigen (Extracellular matrix receptor … | Homo sapiens (Human) | 206 aa |
Protein Details: H0YD13 (CD44)
Protein Information
| Accession | H0YD13 |
|---|---|
| Protein Names | CD44 antigen (Extracellular matrix receptor III) (GP90 lymphocyte homing/adhesion receptor) (HUTCH-I) (Hermes antigen) (Hyaluronate receptor) (Phagocytic glycoprotein 1) (Phagocytic glycoprotein I) |
| Gene Symbol | CD44 |
| Organism | Homo sapiens (Human) |
| Length | 206 aa |
| Isoforms | No isoforms |
| Related PMIDs | 19801377 22496122 29575903 32944167 36430497 |
| Database Sources | CysModDB dbPTM SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.333
Bubble Size: Positive Samples Count
Color Intensity: Positive Ratio
4
PC3 cells
Specificity: 0.333
4/4 (100.0%)
4
Cerebral cortex
Specificity: 0.333
4/4 (100.0%)
2
DU145 cells
Specificity: 0.167
2/2 (100.0%)
1
HeLa cells
Specificity: 0.083
1/1 (100.0%)
1
Endothelial cells
Specificity: 0.083
1/2 (50.0%)
0
Jurkat T cells
Specificity: 0.000
0/25 (0.0%)
0
U937 cells
Specificity: 0.000
0/1 (0.0%)
0
LNCaP cells
Specificity: 0.000
0/46 (0.0%)
0
T cells
Specificity: 0.000
0/4 (0.0%)
0
HAP1 cells
Specificity: 0.000
0/10 (0.0%)
0
293T cells
Specificity: 0.000
0/10 (0.0%)
0
CEMx174 cells
Specificity: 0.000
0/3 (0.0%)
0
Prefrontal cortex
Specificity: 0.000
0/1 (0.0%)
0
Liver membrane
Specificity: 0.000
0/1 (0.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Bars are grouped by tissue/cell line for easy comparison.
Protein Sequence
Single Types:
Experimental Database High Prediction Medium Prediction Low Prediction
Experimental Database High Prediction Medium Prediction Low Prediction
Combined Types:
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
1-501MDKFWWHAAW11GLCLVPLSLA21QIDLNITCRF31AGVFHVEKNG41RYSISRTEAA
51-10051DLCKAFNSTL61PTMAQMEKAL71SIGFETCRYG81FIEGHVVIPR91IHPNSICGAN
101-150101TTSGPIRTPQ111IPEWLIILAS121LLALALILAV131CIAVNSRRRC141GQKKKLVINS
151-200151GNGAVEDRKP161SGLNGEASKS171QEMVHLVNKE181SSETPDQFMT191ADETRNLQNV
201-206201DMKIGV
Palmitoylation Sites Details
| Position | Sources | Domains | Experimental PMIDs |
|---|---|---|---|
| 28 | Prediction (Low) | - | - |
| 53 | Prediction (Medium) | - | - |
| 77 | CYSMODDB SWISSPALM DBPTM Prediction (Medium) | Extracellular link domain | - |
| 97 | Prediction (Medium) | - | - |
| 131 | Prediction (High) | - | - |
| 140 | Prediction (Medium) | - | - |
Conservation Scores
PhyloP
PhastCons
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 28 | C → C | 0.002288 | SNP | Silent | STAD |
| 29 | R → C | 0.001969 | SNP | Missense Mutation | LGG |
| 41 | R → C | 0.001764 | SNP | Missense Mutation | LUAD |
| 199 | S → C | 0.002427 | SNP | Missense Mutation | BLCA |
| 245 | F → C | 0.005618 | SNP | Missense Mutation | PAAD |
| 359 | W → C | 0.002288 | SNP | Missense Mutation | STAD |
| 542 | G → C | 0.002545 | SNP | Missense Mutation | GBM |