Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| H0YMF4 | RPL28 | Large ribosomal subunit protein eL28 … | Homo sapiens (Human) | 112 aa |
Protein Details: H0YMF4 (RPL28)
Protein Information
| Accession | H0YMF4 |
|---|---|
| Protein Names | Large ribosomal subunit protein eL28 (60S ribosomal protein L28) |
| Gene Symbol | RPL28 |
| Organism | Homo sapiens (Human) |
| Length | 112 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 32944167 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSAHLQWMVV11RNCSSFLIKR21NKQTYSTEPN31NLKARNSFRY41NGLIHRKTVG
51-10051VEPAADGKGV61VVVIKRRSGR71KSGNCHRGGH81PWRQGVGLGT91GFPLGRLVSS
101-112101VSRARLSPCP111HL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 13 | SWISSPALM DBPTM CYSMODDB | Large ribosomal subunit protein eL28 Ribosomal eL28/Mak16 Ribosomal L28e protein family | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.03
|
| 75 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.88
|
|
| 109 | - | - | - |
GPS-Palm: 0.97
Deep-Palm: 0.07
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
3
PC3
Specificity: 0.600
3/3 (100.0%)
2
LNCaP
Specificity: 0.400
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 87 | R → C | 0.002288 | SNP | Missense Mutation | STAD |