Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| H3BND9 | PCBP2 | Poly(rC) binding protein 2 | Homo sapiens (Human) | 112 aa |
Protein Details: H3BND9 (PCBP2)
Protein Information
| Accession | H3BND9 |
|---|---|
| Protein Names | Poly(rC) binding protein 2 |
| Gene Symbol | PCBP2 |
| Organism | Homo sapiens (Human) |
| Length | 112 aa |
| Isoforms | No isoforms |
| Related PMIDs | 32944167 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAGPTNAIFK11AFAMIIDKLE21EDISSSMTNS31TAASRPPVTL41RLVVPASQCG
51-10051SLIGKGGCKI61KEIREAGVQW71RSHGSLQQNI81DLPSLRRSSH91LSLPRSRDCR
101-112101LPPPHPNFCI111FL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 49 | SWISSPALM DBPTM CYSMODDB | KH domain | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.90
Deep-Palm: 0.97
|
| 58 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.94
|
|
| 99 | - | - | - |
Deep-Palm: 0.71
|
|
| 109 | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
PC3
Specificity: 1.000
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 109 | C → W | 0.002545 | SNP | Missense Mutation | GBM |
| 148 | I → Cfs*9 | 0.002288 | DEL | Frame Shift Del | STAD |
| 305 | R → C | 0.002020 | SNP | Missense Mutation | PRAD |
| 314 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |