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Select Protein (1 found)

UniProt ID Gene Symbol Protein Name Organism Length Action
H3BPA9 NUP93 Nuclear pore complex protein Nup93 Homo sapiens (Human) 229 aa

Protein Details: H3BPA9 (NUP93)

Protein Information
AccessionH3BPA9
Protein NamesNuclear pore complex protein Nup93
Gene SymbolNUP93
OrganismHomo sapiens (Human)
Length229 aa
IsoformsNo isoforms
Related PMIDs 31251020
Database SourcesCysModDBdbPTMSwissPalm
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
1-501MDTEGFELDD11KSISDMWTMV21KQMTDVLLTP31ATDALKNRSS41VEVRMEFVRQ
51-10051ALAYLEQSYK61NYTLVTVFGN71LHQAQLGGVP81GTYQLVRSFL91NIKLPAPLPG
101-150101LQDGEVEGHP111VWALIYYCMR121CGDLLAASQV131VNRAQHQLGE141FKTWFQEYMN
151-200151SKDRRLSPAT161ENKLRLHYRR171ALRNNTDPYK181RAVYCIIGRC191DVTDNQSEVA
201-229201DKTEDYLWLK211LNQVCFDDDG221TSSPQDRLT
Palmitoylation Sites Details
Position Database Domains Literature (PMID/Cell-Tissue) Mass(PMID/Cell-Tissue) Prediction Scores
118 - - -
GPS-Palm: 0.85
Deep-Palm: 0.48
121 - -
Unknown (32651440)
Deep-Palm: 0.32
185 SWISSPALM DBPTM CYSMODDB Nup93/Nic96 - -
GPS-Palm: 0.75
Deep-Palm: 0.76
190 - - -
Deep-Palm: 0.37
215 - - -
Deep-Palm: 0.58
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
LNCaP
Specificity: 1.000
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID). Blue bars: Literature data, Orange bars: Mass Spectrometry data. The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
TCGA Cysteine Mutation Information

Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.

Position Amino Acid Change Frequency Type Function Cancer Type
42 R → C 0.002288 SNP Missense Mutation STAD
44 R → C 0.005435 SNP Missense Mutation ESCA
137 W → C 0.002294 SNP Missense Mutation OV
245 R → C 0.002506 SNP Missense Mutation COAD
324 Y → C 0.002288 SNP Missense Mutation STAD
327 R → C 0.003774 SNP Missense Mutation UCEC
351 W → C 0.003559 SNP Missense Mutation KIRP
355 Y → C 0.001887 SNP Missense Mutation UCEC
415 W → C 0.002033 SNP Missense Mutation LUSC
781 R → C 0.001887 SNP Missense Mutation UCEC