Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| H3BVG0 | NUP93 | Nuclear pore complex protein Nup93 | Homo sapiens (Human) | 880 aa |
Protein Details: H3BVG0 (NUP93)
Protein Information
| Accession | H3BVG0 |
|---|---|
| Protein Names | Nuclear pore complex protein Nup93 |
| Gene Symbol | NUP93 |
| Organism | Homo sapiens (Human) |
| Length | 880 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDTEGFGELL11QQAEQLAAET21EGISELPHVE31RNLQEIQQAG41ERLRSRTLTR
51-10051TSQETADVKA61SVLLGSRGLD71ISHISQRLES81LSAATTFEPL91EPVKDTDIQG
101-150101FLKNEKDNAL111LSAIEESRKR121TFGMAEEYHR131ESMLVEWEQV141KQRILHTLLA
151-200151SGEDALDFTQ161ESEPSYISDV171GPPGRSSLDN181IEMAYARQIY191IYNEKIVNGH
201-250201LQPNLVDLCA211SVAELDDKSI221SDMWTMVKQM231TDVLLTPATD241ALKNRSSVEV
251-300251RMEFVRQALA261YLEQSYKNYT271LVTVFGNLHQ281AQLGGVPGTY291QLVRSFLNIK
301-350301LPAPLPGLQD311GEVEGHPVWA321LIYYCMRCGD331LLAASQVVNR341AQHQLGEFKT
351-400351WFQEYMNSKD361RRLSPATENK371LRLHYRRALR381NNTDPYKRAV391YCIIGRCDVT
401-450401DNQSEVADKT411EDYLWLKLNQ421VCFDDDGTSS431PQDRLTLSQF441QKQLLEDYGE
451-500451SHFTVNQQPF461LYFQVLFLTA471QFEAAVAFLF481RMERLRCHAV491HVALVLFELK
501-550501LLLKSSGQSA511QLLSHEPGDP521PCLRRLNFVR531LLMLYTRKFE541STDPREALQY
551-600551FYFLRDEKDS561QGENMFLRCV571SELVIESREF581DMILGKLEND591GSRKPGVIDK
601-650601FTSDTKPIIN611KVASVAENKG621LFEEAAKLYD631LAKNADKVLE641LMNKLLSPVV
651-700651PQISAPQSNK661ERLKNMALSI671AERYRAQGIS681ANKFVDSTFY691LLLDLITFFD
701-750701EYHSGHIDRA711FDIIERLKLV721PLNQESVEER731VAAFRNFSDE741IRHNLSEVLL
751-800751ATMNILFTQF761KRLKGTSPSS771SSRPQRVIED781RDSGLALLPR791LECNDTISAH
801-850801CNLYLLGSSH811PPTSPSQVAG821TTATPKSSPH831SDYLCWNDTI841PNVWGHQCEA
851-880851GADGGPHELS861AMLCGSLGRH871TVSTSGTWAH
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 209 | - | - | - |
Deep-Palm: 0.70
|
|
| 325 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.48
|
|
| 328 | - | - |
Unknown
(32651440)
|
Deep-Palm: 0.32
|
|
| 392 | SWISSPALM DBPTM CYSMODDB | Nup93/Nic96 | - | - |
GPS-Palm: 0.75
Deep-Palm: 0.76
|
| 397 | - | - | - |
Deep-Palm: 0.37
|
|
| 422 | - | - | - |
Deep-Palm: 0.68
|
|
| 487 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.95
|
|
| 522 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.93
|
|
| 569 | - | - |
Unknown
(32651440)
|
GPS-Palm: 0.74
Deep-Palm: 0.80
|
|
| 793 | - | - | - |
Deep-Palm: 0.98
|
|
| 801 | - | - | - |
Deep-Palm: 0.89
|
|
| 835 | - | - | - |
Deep-Palm: 0.11
|
|
| 848 | - | - | - |
Deep-Palm: 0.18
|
|
| 864 | - | - | - |
GPS-Palm: 0.67
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
LNCaP
Specificity: 1.000
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 42 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| 44 | R → C | 0.005435 | SNP | Missense Mutation | ESCA |
| 137 | W → C | 0.002294 | SNP | Missense Mutation | OV |
| 245 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 324 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |
| 327 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 351 | W → C | 0.003559 | SNP | Missense Mutation | KIRP |
| 355 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 415 | W → C | 0.002033 | SNP | Missense Mutation | LUSC |
| 781 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |