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Select Protein (1 found)

UniProt ID Gene Symbol Protein Name Organism Length Action
I3L1H3 LITAF Lipopolysaccharide induced TNF factor Homo sapiens (Human) 68 aa

Protein Details: I3L1H3 (LITAF)

Protein Information
AccessionI3L1H3
Protein NamesLipopolysaccharide induced TNF factor
Gene SymbolLITAF
OrganismHomo sapiens (Human)
Length68 aa
IsoformsNo isoforms
Related PMIDs No related PMIDs
Database SourcesCysModDBdbPTMSwissPalm
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
1-501MCCPSCNKMI11VSQLSYNAGA21LTWLSCGSLC31LLGCIAGCCF41IPFCVDALQD
51-6851VDHYCPNCRA61LLGTYKRL
Palmitoylation Sites Details
Position Database Domains Literature (PMID/Cell-Tissue) Mass(PMID/Cell-Tissue) Prediction Scores
2 LPS-induced tumour necrosis factor alpha factor - -
GPS-Palm: 0.96
Deep-Palm: 0.01
3 LPS-induced tumour necrosis factor alpha factor - -
GPS-Palm: 0.97
Deep-Palm: 0.01
6 LPS-induced tumour necrosis factor alpha factor - -
GPS-Palm: 0.91
Deep-Palm: 0.02
26 LPS-induced tumour necrosis factor alpha factor LITAF domain containing protein - -
GPS-Palm: 0.68
Deep-Palm: 0.70
30 LPS-induced tumour necrosis factor alpha factor LITAF domain containing protein - -
Deep-Palm: 0.64
34 LPS-induced tumour necrosis factor alpha factor LITAF domain containing protein - -
GPS-Palm: 0.69
Deep-Palm: 0.53
38 LPS-induced tumour necrosis factor alpha factor LITAF domain containing protein - -
GPS-Palm: 0.76
Deep-Palm: 0.13
39 LPS-induced tumour necrosis factor alpha factor LITAF domain containing protein - -
GPS-Palm: 0.74
Deep-Palm: 0.20
44 SWISSPALM DBPTM CYSMODDB LITAF-like zinc ribbon domain LITAF domain containing protein LPS-induced tumour necrosis factor alpha factor
HeLa (29575903)
-
Deep-Palm: 0.33
55 - - -
Deep-Palm: 0.57
58 - - -
GPS-Palm: 0.75
Deep-Palm: 0.09
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information

Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.

Position Amino Acid Change Frequency Type Function Cancer Type
116 W → C 0.002747 SNP Missense Mutation LIHC
137 C → C 0.001887 SNP Silent UCEC
160 R → C 0.001887 SNP Missense Mutation UCEC