Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| K7EJJ4 | SCAMP4 | Secretory carrier-associated membrane protein (Secretory … | Homo sapiens (Human) | 57 aa |
Protein Details: K7EJJ4 (SCAMP4)
Protein Information
| Accession | K7EJJ4 |
|---|---|
| Protein Names | Secretory carrier-associated membrane protein (Secretory carrier membrane protein) |
| Gene Symbol | SCAMP4 |
| Organism | Homo sapiens (Human) |
| Length | 57 aa |
| Isoforms | No isoforms |
| Related PMIDs | 19801377 36430497 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSEKENNFPP11LPKFIPVKPC21FYQNFSDEIP31VEHQVLVKRI41YRLWMFYCAT
51-5751LGVNLIA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 20 | SWISSPALM DBPTM CYSMODDB | SCAMP family SCAMP |
HeLa
(29575903)
| - |
GPS-Palm: 0.85
Deep-Palm: 0.81
|
| 48 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
1
cerebral cortex
Specificity: 0.333
1/1 (100.0%)
1
DU145 cell
Specificity: 0.333
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
LNCaP cells (Mass)
Specificity: 0.333
1/4 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 48 | C → C | 0.017544 | SNP | Silent | UCS |
| 190 | W → C | 0.002427 | SNP | Missense Mutation | BLCA |