Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| K7EK46 | GALNT1 | Polypeptide N-acetylgalactosaminyltransferase 1 | Homo sapiens (Human) | 50 aa |
Protein Details: K7EK46 (GALNT1)
Protein Information
| Accession | K7EK46 |
|---|---|
| Protein Names | Polypeptide N-acetylgalactosaminyltransferase 1 |
| Gene Symbol | GALNT1 |
| Organism | Homo sapiens (Human) |
| Length | 50 aa |
| Isoforms | No isoforms |
| Related PMIDs | 32944167 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MRKFAYCKVV11LATSLIWVLL21DMFLLLYFSE31CNKCDEKKER41GLPAGDAQVN
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 7 | SWISSPALM DBPTM CYSMODDB | - |
HeLa
(29575903)
| - |
GPS-Palm: 0.92
Deep-Palm: 0.02
|
| 31 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.88
|
|
| 34 | - | - | - |
Deep-Palm: 0.91
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
PC3
Specificity: 1.000
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 142 | R → C | 0.003460 | SNP | Missense Mutation | CESC |
| 212 | C → F | 0.002033 | SNP | Missense Mutation | LUSC |
| 212 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 235 | C → C | 0.001887 | SNP | Silent | UCEC |
| 330 | C → R | 0.001887 | SNP | Missense Mutation | UCEC |
| 352 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 459 | C → C | 0.001887 | SNP | Silent | UCEC |
| 497 | C → F | 0.001764 | SNP | Missense Mutation | LUAD |
| 523 | C → C | 0.001887 | SNP | Silent | UCEC |