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Select Protein (1 found)

UniProt ID Gene Symbol Protein Name Organism Length Action
L8ECA2 VDAC1 Alternative protein VDAC1 Homo sapiens (Human) 41 aa

Protein Details: L8ECA2 (VDAC1)

Protein Information
AccessionL8ECA2
Protein NamesAlternative protein VDAC1
Gene SymbolVDAC1
OrganismHomo sapiens (Human)
Length41 aa
IsoformsNo isoforms
Related PMIDs 26876311 32944167
Database SourcesNo database sources
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
1-411MSGMQVLLNM11LALQVKVDSA21LRCYPSRGTE31ETYFQKRSFQ41W
Palmitoylation Sites Details
Position Database Domains Literature (PMID/Cell-Tissue) Mass(PMID/Cell-Tissue) Prediction Scores
23 - - -
GPS-Palm: 0.79
Deep-Palm: 0.90
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
3
PC3
Specificity: 0.750
3/3 (100.0%)
1
frontal cortex
Specificity: 0.250
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID). Blue bars: Literature data, Orange bars: Mass Spectrometry data. The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
TCGA Cysteine Mutation Information

Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.

Position Amino Acid Change Frequency Type Function Cancer Type
152 G → C 0.002545 SNP Missense Mutation GBM
218 R → C 0.002033 SNP Missense Mutation THCA
218 R → C 0.001887 SNP Missense Mutation UCEC