Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| O08688 | Capn5 | Calpain-5 (EC 3.4.22.-) (New calpain … | Mus musculus (Mouse) | 640 aa |
Protein Details: O08688 (Capn5)
Protein Information
| Accession | O08688 |
|---|---|
| Protein Names | Calpain-5 (EC 3.4.22.-) (New calpain 3) (nCL-3) |
| Gene Symbol | Capn5 |
| Organism | Mus musculus (Mouse) |
| Length | 640 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 31311849 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MFSCAKAYED11QNYSALKRAC21LRKKVLFEDP31LFPATDDSLY41YKGTPGPTVR
51-10051WKRPKDICDD61PRLFVDGISS71HDLHQGQVGN81CWFVAACSSL91ASRESLWQKV
101-150101IPDWKEQEWN111PEKPDSYAGI121FHFNFWRFGE131WVDVIVDDRL141PTVNNQLIYC
151-200151HSNSKNEFWC161ALVEKAYAKL171AGCYQALDGG181NTADALVDFT191GGVSEPIDLT
201-250201EGDLATDEAK211RNQLFERVLK221VHSRGGLISA231SIKAVTAADM241EARLACGLVK
251-300251GHAYAVTDVR261KVRLGHGLLA271FFKSEKLDMI281RLRNPWGERE291WTGPWSDTSE
301-350301EWQKVSKSER311EKMGVTVQDD321GEFWMTFEDM331CRYFTDIIKC341RLINTSYLSI
351-400351HKTWEEARLH361GAWTRHEDPQ371QNRSGGCINH381KDTFFQNPQY391VFEVKKPEDE
401-450401VLISIQQRPK411RSTRREGKGE421NLAIGFDIYK431VEENRQYRMH441SLQHKAASSI
451-500451YINSRSVFLR461TELPEGRYVI471IPTTFEPGHT481GEFLLRVFTD491VPSNCRELRL
501-550501DEPPRTCWSS511LCGYPQQVAQ521VHVLGAAGLK531DSPTGANSYV541IIKCEGEKVR
551-600551SAVQRGTSTP561EYNVKGIFYR571KKLAQPITVQ581VWNHRVLKDE591FLGQVHLKTA
601-640601PDDLQDLHTL611HLQDRSSRQP621SDLPGIVAVR631VLCSASLTAV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 4 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.02
|
|
| 20 | Papain-like cysteine peptidase superfamily | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.96
|
|
| 58 | - | - | - |
Deep-Palm: 0.70
|
|
| 81 | - | - | - |
Deep-Palm: 0.19
|
|
| 87 | - | - | - |
Deep-Palm: 0.23
|
|
| 150 | - | - | - |
Deep-Palm: 0.14
|
|
| 160 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.27
|
|
| 173 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.94
|
|
| 246 | - | - | - |
Deep-Palm: 0.92
|
|
| 331 | - | - | - |
Deep-Palm: 0.02
|
|
| 340 | - | - | - |
Deep-Palm: 0.06
|
|
| 377 | - | - | - |
Deep-Palm: 0.06
|
|
| 495 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
|
Brain
(35358180)
|
GPS-Palm: 0.91
Deep-Palm: 0.93
|
| 507 | SWISSPALM DBPTM CYSMODDB | - |
Brain
(31311849)
Forebrain
(28680068)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.70
|
| 512 | SWISSPALM DBPTM CYSMODDB | - |
Brain
(31311849)
Forebrain
(28680068)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.89
|
| 544 | - | - | - |
Deep-Palm: 0.65
|
|
| 633 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.13
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
3
Brain
Specificity: 0.158
3/3 (100.0%)
1
Liver
Specificity: 0.053
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
15
Brain tissue (Mass)
Specificity: 0.789
15/56 (26.8%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.