Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| O35114 | Scarb2 | Lysosome membrane protein 2 (85 … | Mus musculus (Mouse) | 478 aa |
Protein Details: O35114 (Scarb2)
Protein Information
| Accession | O35114 |
|---|---|
| Protein Names | Lysosome membrane protein 2 (85 kDa lysosomal membrane sialoglycoprotein) (LGP85) (Lysosome membrane protein II) (LIMP II) (Scavenger receptor class B member 2) |
| Gene Symbol | Scarb2 |
| Organism | Mus musculus (Mouse) |
| Length | 478 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 31772009 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGRCCFYTAG11TLSLLLLVTS21VTLLVARVFQ31KAVDQTIEKN41MVLQNGTKVF
51-10051NSWEKPPLPV61YIQFYFFNVT71NPEEILQGEI81PLLEEVGPYT91YRELRNKANI
101-150101QFGENGTTIS111AVTNKAYVFE121RNQSVGDPNV131DLIRTINIPL141LTVVDLAQLT
151-200151LLRELIEAML161KAYQQKLFVI171HTVHELLWGY181KDEILSLVHI191FKPDVSPNFG
201-250201LFYERNGTND211GEYVFLTGED221NYLNFSKIVE231WNGKTSLDWW241TTDTCNMING
251-300251TDGDSFHPLI261SKDEVLYLFP271SDLCRSVHIT281FSSFENVEGL291PAFRYKVPAE
301-350301ILANTSENAG311FCIPEGNCMD321SGVLNISICK331NGAPIIMSFP341HFYQADEKFV
351-400351SAIKGMHPNK361EEHESFVDIN371PLTGIILRGA381KRFQINTYVR391KLDDFVETGD
401-450401IRTMVFPVMY411LNESVLIDKE421TANQLKSVIN431TTLVVTNIPY441IIMALGVFFG
451-478451LVFTWLACRG461QGSMDEGTAD471ERAPLIRT
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 4 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.04
|
|
| 5 | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.04
|
|
| 245 | - | - | - |
Deep-Palm: 0.03
|
|
| 274 | SWISSPALM DBPTM CYSMODDB | CD36 family |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.84
Deep-Palm: 0.85
|
| 312 | - | - | - |
Deep-Palm: 0.67
|
|
| 318 | - | - | - |
Deep-Palm: 0.19
|
|
| 329 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.10
|
|
| 458 | - | - | - |
GPS-Palm: 0.75
Deep-Palm: 0.91
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.545
6
Liver
Specificity: 0.158
6/6 (100.0%)
2
Brain
Specificity: 0.053
2/2 (100.0%)
2
Testis
Specificity: 0.053
2/2 (100.0%)
1
NSC
Specificity: 0.026
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
27
Brain tissue (Mass)
Specificity: 0.711
27/56 (48.2%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.