Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| O35643 | Ap1b1 | AP-1 complex subunit beta-1 (Adaptor … | Mus musculus (Mouse) | 943 aa |
Protein Details: O35643 (Ap1b1)
Protein Information
| Accession | O35643 |
|---|---|
| Protein Names | AP-1 complex subunit beta-1 (Adaptor protein complex AP-1 subunit beta-1) (Adaptor-related protein complex 1 subunit beta-1) (Beta-1-adaptin) (Beta-adaptin 1) (Clathrin assembly protein complex 1 beta large chain) (Golgi adaptor HA1/AP1 adaptin beta subunit) |
| Gene Symbol | Ap1b1 |
| Organism | Mus musculus (Mouse) |
| Length | 943 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29660268 29733200 31311849 34200797 34884899 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MTDSKYFTTT11KKGEIFELKA21ELNSDKKEKK31KEAVKKVIAS41MTVGKDVSAL
51-10051FPDVVNCMQT61DNLELKKLVY71LYLMNYAKSQ81PDMAIMAVNT91FVKDCEDPNP
101-150101LIRALAVRTM111GCIRVDKITE121YLCEPLRKCL131KDEDPYVRKT141AAVCVAKLHD
151-200151INAQLVEDQG161FLDTLKDLIS171DSNPMVVANA181VAALSEIAES191HPSSNLLDLN
201-250201PQSINKLLTA211LNECTEWGQI221FILDCLANYM231PKDDREAQSI241CERVTPRLSH
251-300251ANSAVVLSAV261KVLMKFMEML271SKDLDYYATL281LKKLAPPLVT291LLSAEPELQY
301-350301VALRNINLIV311QKRPEILKHE321MKVFFVKYND331PIYVKLEKLD341IMIRLASQAN
351-400351IAQVLAELKE361YATEVDVDFV371RKAVRAIGRC381AIKVEQSAER391CVSTLLDLIQ
401-450401TKVNYVVQEA411IVVIKDIFRK421YPNKYESVIA431TLCENLDSLD441EPEARAAMIW
451-500451IVGEYAERID461NADELLESFL471EGFHDESTQV481QLQLLTAIVK491LFLKKPTETQ
501-550501ELVQQVLSLA511TQDSDNPDLR521DRGYIYWRLL531STDPVAAKEV541VLAEKPLISE
551-600551ETDLIEPTLL561DELICYIGTL571ASVYHKPPNA581FVEGGRGVVH591KSLPPRTASS
601-650601ESTESPETAP611AGAPAGDQPD621VIPAQGDLLG631DLLNLDLGPP641VSGPPLAASS
651-700651VQMGAVDLLG661GGLDSLIGDS671NFGAPSASVA681AAPAPARLGA691PISSGLSDLF
701-750701DLTSGVGTLS711GSYVAPKAVW721LPAMKAKGLE731ISGTFTRQAG741SISMDLQLTN
751-800751KALQVMTDFA761IQFNRNSFGL771APAAPLQVHV781PLSPNQTVEI791SLPLNTVGSV
801-850801LKMEPLNNLQ811VAVKNNIDVF821YFSTLYPLHV831LFVEDGKMDR841QMFLATWKDI
851-900851ANENEAQFQI861RDCPLNTEAA871SNKLQSSNIF881TVAKRNVEGQ891DMLYQSLKLT
901-943901NGIWVLAELR911IQPGNPSFTL921SLKCRAPEVS931QHVYQAYETI941LKN
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 57 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.98
|
|
| 95 | Adaptin N terminal region |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.77
Deep-Palm: 0.92
|
|
| 112 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.97
|
|
| 123 | non-SMC mitotic condensation complex subunit 1 |
Brain
(34200797)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.93
Deep-Palm: 0.82
|
|
| 129 | non-SMC mitotic condensation complex subunit 1 |
Brain
(34200797)
|
Brain
(31311849)
|
Deep-Palm: 0.93
|
|
| 144 | non-SMC mitotic condensation complex subunit 1 |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.65
Deep-Palm: 0.94
|
|
| 214 | - | - | - |
Deep-Palm: 0.86
|
|
| 225 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.64
|
|
| 241 | non-SMC mitotic condensation complex subunit 1 |
Brain
(31311849)
|
Brain
(35358180)
|
GPS-Palm: 0.71
Deep-Palm: 0.83
|
|
| 380 | SWISSPALM DBPTM CYSMODDB | Adaptin N terminal region | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.96
|
| 391 | - | - |
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.93
|
|
| 433 | - | - | - |
Deep-Palm: 0.95
|
|
| 565 | - | - | - |
Deep-Palm: 0.90
|
|
| 863 | Beta2-adaptin appendage C-terminal sub-domain |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.65
|
|
| 924 | - | - | - |
Deep-Palm: 0.71
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.545
6
Brain
Specificity: 0.143
6/6 (100.0%)
5
Liver
Specificity: 0.119
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.968
30
Brain tissue (Mass)
Specificity: 0.714
30/56 (53.6%)
1
Liver tissue (Mass)
Specificity: 0.024
1/8 (12.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.