Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| O55013 | Trappc3 | Trafficking protein particle complex subunit … | Mus musculus (Mouse) | 180 aa |
Protein Details: O55013 (Trappc3)
Protein Information
| Accession | O55013 |
|---|---|
| Protein Names | Trafficking protein particle complex subunit 3 (BET3 homolog) |
| Gene Symbol | Trappc3 |
| Organism | Mus musculus (Mouse) |
| Length | 180 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 29575903 29660268 29733200 31772009 34200797 34884899 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSRQANRGTE11SKKMSSELFT21LTYGALVTQL31CKDYENDEDV41NKQLDRMGYN
51-10051IGVRLIEDFL61ARSNVGRCHD71FRETADVIAK81VAFKMYLGIT91PSITNWSPAG
101-150101DEFSLILENN111PLVDFVELPD121NHSALIYSNL131LCGVLRGALE141MVQMAVEAKF
151-180151VQDTLKGDGV161TEIRMRFIRR171IEDNLPAGEE
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 31 | NO signalling/Golgi transport ligand-binding domain superfamily Transport protein particle (TRAPP) component Trafficking protein particle complex subunit 3 Bet3 family | - |
Brain
(35358180)
|
Deep-Palm: 0.79
|
|
| 68 | SWISSPALM DBPTM CYSMODDB | Transport protein particle (TRAPP) component |
liver
(26165157)
| - |
Deep-Palm: 0.95
|
| 132 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.94
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.357
5
Brain
Specificity: 0.250
5/5 (100.0%)
4
Raw 264.7
Specificity: 0.200
4/4 (100.0%)
4
Liver
Specificity: 0.200
4/4 (100.0%)
1
NSC
Specificity: 0.050
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Brain tissue (Mass)
Specificity: 0.300
6/56 (10.7%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.