Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| O55029 | Copb2 | Coatomer subunit beta' (Beta'-coat protein) … | Mus musculus (Mouse) | 905 aa |
Protein Details: O55029 (Copb2)
Protein Information
| Accession | O55029 |
|---|---|
| Protein Names | Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP) (p102) |
| Gene Symbol | Copb2 |
| Organism | Mus musculus (Mouse) |
| Length | 905 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 35477839 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MPLRLDIKRK11LTARSDRVKS21VDLHPTEPWM31LASLYNGSVC41VWNHETQTLV
51-10051KTFEVCDLPV61RAAKFVARKN71WVVTGADDMQ81IRVFNYNTLE91RVHMFEAHSD
101-150101YIRCIAVHPT111QPFILTSSDD121MLIKLWDWDK131KWSCSQVFEG141HTHYVMQIVI
151-200151NPKDNNQFAS161ASLDRTIKVW171QLGSSSPNFT181LEGHEKGVNC191IDYYSGGDKP
201-250201YLISGADDRL211VKIWDYQNKT221CVQTLEGHAQ231NVSCASFHPE241LPIIITGSED
251-300251GTVRIWHSST261YRLESTLNYG271MERVWCVASL281RGSNNVALGY291DEGSIIVKLG
301-350301REEPAMSMDA311NGKIIWAKHS321EVQQANLKAM331GDTEIKDGER341LPLAVKDMGS
351-400351CEIYPQTIQH361NPNGRFVVVC371GDGEYIIYTA381MALRNKSFGS391AQEFAWAHDS
401-450401SEYAIRESNS411IVKIFKNFKE421KKSFKPDFGA431ESIYGGFLLG441VRSVNGLAFY
451-500451DWENTELIRR461IEIQPKHIFW471SDSGELVCIA481TEESFFILKY491LSEKVLAAQE
501-550501THEGVTEDGI511EDAFEVLGEI521QEIVKTGLWV531GDCFIYTSSV541NRLNYYVGGE
551-600551IVTIAHLDRT561MYLLGYIPKD571NRLYLGDKEL581NIVSYSLLVS591VLEYQTAVMR
601-650601RDFSMADKVL611PTIPKEQRTR621VAHFLEKQGF631KQQALTVSTD641PEHRFELALQ
651-700651LGELKIAYQL661AVEAESEQKW671KQLAELAISK681CQFSLAQECL691HHAQDYGGLL
701-750701LLATASGNAS711MVNKLAEGAE721RDGKNNVAFM731SYFLQGKLDA741CLELLIRTGR
751-800751LPEAAFLART761YLPSQVSRVV771KLWRENLSKV781NQKAAESLAD791PTEYENLFPG
801-850801LKEAFVVEEW811VKETHADLWP821AKQYPLVTPN831EERNVMEEAK841GFQPSRPTAQ
851-900851QEPDGKPASS861PVIMASQTTH871KEEKSLLELE881VDLDNLELED891IDTTDINLDE
901-905901DILDD
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 40 | WD40/YVTN repeat-like-containing domain superfamily Coatomer complex subunit Nucleoporin domain | - | - |
Deep-Palm: 0.21
|
|
| 56 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.93
Deep-Palm: 0.64
|
| 104 | - | - | - |
Deep-Palm: 0.13
|
|
| 134 | - | - | - |
Deep-Palm: 0.04
|
|
| 190 | - | - | - |
Deep-Palm: 0.59
|
|
| 221 | - | - | - |
Deep-Palm: 0.51
|
|
| 234 | - | - | - |
Deep-Palm: 0.55
|
|
| 276 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.84
Deep-Palm: 0.44
|
| 351 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.87
|
|
| 370 | - | - | - |
Deep-Palm: 0.06
|
|
| 478 | - | - | - |
Deep-Palm: 0.20
|
|
| 533 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.48
|
|
| 681 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.75
|
|
| 689 | - | - | - |
Deep-Palm: 0.97
|
|
| 741 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.714
5
Liver
Specificity: 0.714
5/5 (100.0%)
2
Testis
Specificity: 0.286
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.