Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| O88342 | Wdr1 | WD repeat-containing protein 1 (Actin-interacting … | Mus musculus (Mouse) | 606 aa |
Protein Details: O88342 (Wdr1)
Protein Information
| Accession | O88342 |
|---|---|
| Protein Names | WD repeat-containing protein 1 (Actin-interacting protein 1) (AIP1) |
| Gene Symbol | Wdr1 |
| Organism | Mus musculus (Mouse) |
| Length | 606 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 34200797 34884899 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MPYEIKKVFA11SLPQVERGVS21KILGGDPKGD31HFLYTNGKCV41ILRNIDNPAI
51-10051ADIYTEHAHQ61VVVAKYAPSG71FYIASGDISG81KLRIWDTTQK91EHLLKYEYQP
101-150101FAGKIKDIAW111TEDSKRIAVV121GEGREKFGAV131FLWDTGSSVG141EITGHNKVIN
151-200151SVDIKQTRPY161RLATGSDDNC171AAFFEGPPFK181FKFTIGDHSR191FVNCVRFSPD
201-250201GNRFATASAD211GQIFIYDGKT221GEKVCALGES231KAHDGGIYAI241SWSPDSTHLL
251-300251SASGDKTSKI261WDVNVNSVVS271TFPMGSNVLD281QQLGCLWQKD291HLLSISLSGY
301-350301INYLDKNNPS311KPLRVIKGHS321KSIQCLTVHR331NGGKSYIYSG341SHDGHINYWD
351-400351SETGENDSFS361GKGHTNQVSR371MTVNESEQLV381SCSMDDTVRY391TNLTLRDYSG
401-450401QGVVKLDVQP411KCVAVGPGGY421TVVVCIGQIV431LLKDQKKCFS441IDNPGYEPEV
451-500451VAVHPGGDTV461AVGGTDGNVR471VYSILASTLK481DEGKLLEAKG491PVTDVAYSHD
501-550501GAFLAVCDAS511KVVTVFSVAD521GYSENNVFYG531HHAKIVCLAW541SPDNEHFASG
551-600551GMDMMVYVWT561LSDPETKVKI571QDAHRLHHVS581SLAWLDEHTL591VTTSHDASVK
601-606601EWTITY
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 39 | WD40/YVTN repeat-like-containing domain superfamily WD-REPEATCONTAINING PROTEIN WDR1 | - | - |
Deep-Palm: 0.63
|
|
| 170 | - |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.52
|
|
| 194 | WD domain G-beta repeat |
Brain
(34200797)
| - |
GPS-Palm: 0.75
Deep-Palm: 0.50
|
|
| 225 | WDR5 beta-propeller domain |
MLE
(39008777)
|
Brain
(35358180)
|
GPS-Palm: 0.74
Deep-Palm: 0.81
|
|
| 285 | - | - | - |
Deep-Palm: 0.62
|
|
| 325 | SWISSPALM DBPTM CYSMODDB | WD domain, G-beta repeat |
liver
(26165157)
MLE
(39008777)
|
Brain
(35358180)
|
GPS-Palm: 0.89
Deep-Palm: 0.91
|
| 382 | - |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.34
|
|
| 412 | - | - | - |
Deep-Palm: 0.90
|
|
| 425 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.95
|
|
| 438 | - |
Brain
(34200797)
| - |
Deep-Palm: 0.79
|
|
| 507 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.88
|
|
| 537 | - | - | - |
Deep-Palm: 0.07
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
4
Brain
Specificity: 0.121
4/4 (100.0%)
4
Liver
Specificity: 0.121
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
25
Brain tissue (Mass)
Specificity: 0.758
25/56 (44.6%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.