Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P02088 | Hbb-b1 | Hemoglobin subunit beta-1 (Beta-1-globin) (Hemoglobin … | Mus musculus (Mouse) | 147 aa |
Protein Details: P02088 (Hbb-b1)
Protein Information
| Accession | P02088 |
|---|---|
| Protein Names | Hemoglobin subunit beta-1 (Beta-1-globin) (Hemoglobin beta-1 chain) (Hemoglobin beta-major chain) |
| Gene Symbol | Hbb-b1 |
| Organism | Mus musculus (Mouse) |
| Length | 147 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34200797 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVHLTDAEKA11AVSCLWGKVN21SDEVGGEALG31RLLVVYPWTQ41RYFDSFGDLS
51-10051SASAIMGNAK61VKAHGKKVIT71AFNDGLNHLD81SLKGTFASLS91ELHCDKLHVD
101-147101PENFRLLGNM111IVIVLGHHLG121KDFTPAAQAA131FQKVVAGVAT141ALAHKYH
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 14 | SWISSPALM DBPTM CYSMODDB | Globin Globin-like superfamily Globin/Protoglobin |
Liver
(28526873)
| - |
GPS-Palm: 0.91
Deep-Palm: 0.95
|
| 94 | SWISSPALM DBPTM CYSMODDB | Globin |
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.97
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
4
Liver
Specificity: 0.111
4/4 (100.0%)
4
Brain
Specificity: 0.111
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
28
Brain tissue (Mass)
Specificity: 0.778
28/56 (50.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.