Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P08122 | Col4a2 | Collagen alpha-2(IV) chain [Cleaved into: … | Mus musculus (Mouse) | 1707 aa |
Protein Details: P08122 (Col4a2)
Protein Information
| Accession | P08122 |
|---|---|
| Protein Names | Collagen alpha-2(IV) chain [Cleaved into: Canstatin] |
| Gene Symbol | Col4a2 |
| Organism | Mus musculus (Mouse) |
| Length | 1707 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDRVRFKASG11PPLRGWLLLA21TVTVGLLAQS31VLGGVKKLDV41PCGGRDCSGG
51-10051CQCYPEKGAR61GQPGAVGPQG71YNGPPGLQGF81PGLQGRKGDK91GERGVPGPTG
101-150101PKGDVGARGV111SGFPGADGIP121GHPGQGGPRG131RPGYDGCNGT141RGDAGPQGPS
151-200151GSGGFPGLPG161PQGPKGQKGE171PYALSKEDRD181KYRGEPGEPG191LVGYQGPPGR
201-250201PGPIGQMGPM211GAPGRPGPPG221PPGPKGQPGN231RGLGFYGQKG241EKGDIGQPGP
251-300251NGIPSDITLV261GPTTSTIHPD271LYKGEKGDEG281EQGIPGVISK291GEEGIMGFPG
301-350301IRGFPGLDGE311KGVVGQKGSR321GLDGFQGPSG331PRGPKGERGE341QGPPGPSVYS
351-400351PHPSLAKGAR361GDPGFQGAHG371EPGSRGEPGE381PGTAGPPGPS391VGDEDSMRGL
401-450401PGEMGPKGFS411GEPGSPARYL421GPPGADGRPG431PQGVPGPAGP441PGPDGFLFGL
451-500451KGSEGRVGYP461GPSGFPGTRG471QKGWKGEAGD481CQCGQVIGGL491PGLPGPKGFP
501-550501GVNGELGKKG511DQGDPGLHGI521PGFPGFKGAP531GVAGAPGPKG541IKGDSRTITT
551-600551KGERGQPGIP561GVHGMKGDDG571VPGRDGLDGF581PGLPGPPGDG591IKGPPGDAGL
601-650601PGVPGTKGFP611GDIGPPGQGL621PGPKGERGFP631GDAGLPGPPG641FPGPPGPPGT
651-700651PGQRDCDTGV661KRPIGGGQQV671VVQPGCIEGP681TGSPGQPGPP691GPTGAKGVRG
701-750701MPGFPGASGE711QGLKGFPGDP721GREGFPGPPG731FMGPRGSKGT741TGLPGPDGPP
751-800751GPIGLPGPAG761PPGDRGIPGE771VLGAQPGTRG781DAGLPGQPGL791KGLPGETGAP
801-850801GFRGSQGMPG811MPGLKGQPGF821PGPSGQPGQS831GPPGQHGFPG841TPGREGPLGQ
851-900851PGSPGLGGLP861GDRGEPGDPG871VPGPVGMKGL881SGDRGDAGMS891GERGHPGSPG
901-950901FKGMAGMPGI911PGQKGDRGSP921GMDGFQGMLG931LKGRQGFPGT941KGEAGFFGVP
951-1000951GLKGLPGEPG961VKGNRGDRGP971PGPPPLILPG981MKDIKGEKGD991EGPMGLKGYL
1001-10501001GLKGIQGMPG1011VPGVSGFPGL1021PGRPGFIKGV1031KGDIGVPGTP1041GLPGFPGVSG
1051-11001051PPGITGFPGF1061TGSRGEKGTP1071GVAGVFGETG1081PTGDFGDIGD1091TVDLPGSPGL
1101-11501101KGERGITGIP1111GLKGFFGEKG1121AAGDIGFPGI1131TGMAGAQGSP1141GLKGQTGFPG
1151-12001151LTGLQGPQGE1161PGRIGIPGDK1171GDFGWPGVPG1181LPGFPGIRGI1191SGLHGLPGTK
1201-12501201GFPGSPGVDA1211HGDPGFPGPT1221GDRGDRGEAN1231TLPGPVGVPG1241QKGERGTPGE
1251-13001251RGPAGSPGLQ1261GFPGISPPSN1271ISGSPGDVGA1281PGIFGLQGYQ1291GPPGPPGPNA
1301-13501301LPGIKGDEGS1311SGAAGFPGQK1321GWVGDPGPQG1331QPGVLGLPGE1341KGPKGEQGFM
1351-14001351GNTGPSGAVG1361DRGPKGPKGD1371QGFPGAPGSM1381GSPGIPGIPQ1391KIAVQPGTLG
1401-14501401PQGRRGLPGA1411LGEIGPQGPP1421GDPGFRGAPG1431KAGPQGRGGV1441SAVPGFRGDQ
1451-15001451GPMGHQGPVG1461QEGEPGRPGS1471PGLPGMPGRS1481VSIGYLLVKH1491SQTDQEPMCP
1501-15501501VGMNKLWSGY1511SLLYFEGQEK1521AHNQDLGLAG1531SCLARFSTMP1541FLYCNPGDVC
1551-16001551YYASRNDKSY1561WLSTTAPLPM1571MPVAEEEIKP1581YISRCSVCEA1591PAVAIAVHSQ
1601-16501601DTSIPHCPAG1611WRSLWIGYSF1621LMHTAAGDEG1631GGQSLVSPGS1641CLEDFRATPF
1651-17001651IECNGGRGTC1661HYFANKYSFW1671LTTIPEQNFQ1681STPSADTLKA1691GLIRTHISRC
1701-17071701QVCMKNL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 42 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.84
|
|
| 47 | - | - | - |
Deep-Palm: 0.68
|
|
| 51 | - | - | - |
Deep-Palm: 0.48
|
|
| 53 | - | - | - |
Deep-Palm: 0.43
|
|
| 137 | - | - | - |
Deep-Palm: 0.19
|
|
| 481 | - | - | - |
Deep-Palm: 0.58
|
|
| 483 | - | - | - |
Deep-Palm: 0.63
|
|
| 656 | - |
MLE
(39008777)
| - |
Deep-Palm: 0.66
|
|
| 676 | - | - | - |
Deep-Palm: 0.50
|
|
| 1499 | - | - | - |
Deep-Palm: 0.11
|
|
| 1532 | - | - | - |
Deep-Palm: 0.83
|
|
| 1544 | - | - | - |
Deep-Palm: 0.63
|
|
| 1550 | - | - | - |
Deep-Palm: 0.15
|
|
| 1585 | - | - | - |
Deep-Palm: 0.73
|
|
| 1588 | - | - | - |
Deep-Palm: 0.84
|
|
| 1607 | - | - | - |
Deep-Palm: 0.17
|
|
| 1641 | - | - | - |
Deep-Palm: 0.94
|
|
| 1653 | SWISSPALM DBPTM CYSMODDB | C-terminal tandem repeated domain in type 4 procollagen |
Liver
(28526873)
| - |
GPS-Palm: 0.72
Deep-Palm: 0.50
|
| 1660 | - | - | - |
Deep-Palm: 0.10
|
|
| 1700 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.02
|
|
| 1703 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.01
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Liver
Specificity: 1.000
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.