Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P08670 | VIM | Vimentin | Homo sapiens (Human) | 466 aa |
Protein Details: P08670 (VIM)
Protein Information
| Accession | P08670 |
|---|---|
| Protein Names | Vimentin |
| Gene Symbol | VIM |
| Organism | Homo sapiens (Human) |
| Length | 466 aa |
| Isoforms | No isoforms |
| Related PMIDs | 19137006 29575903 29733200 32944167 36430497 |
| Database Sources | CysModDB dbPTM SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.316
Bubble Size: Positive Samples Count
Color Intensity: Positive Ratio
6
Jurkat T cells
Specificity: 0.316
6/25 (24.0%)
6
HAP1 cells
Specificity: 0.316
6/10 (60.0%)
4
Cerebral cortex
Specificity: 0.211
4/4 (100.0%)
3
PC3 cells
Specificity: 0.158
3/4 (75.0%)
0
U937 cells
Specificity: 0.000
0/1 (0.0%)
0
DU145 cells
Specificity: 0.000
0/2 (0.0%)
0
HeLa cells
Specificity: 0.000
0/1 (0.0%)
0
LNCaP cells
Specificity: 0.000
0/46 (0.0%)
0
T cells
Specificity: 0.000
0/4 (0.0%)
0
293T cells
Specificity: 0.000
0/10 (0.0%)
0
CEMx174 cells
Specificity: 0.000
0/3 (0.0%)
0
Endothelial cells
Specificity: 0.000
0/2 (0.0%)
0
Prefrontal cortex
Specificity: 0.000
0/1 (0.0%)
0
Liver membrane
Specificity: 0.000
0/1 (0.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Bars are grouped by tissue/cell line for easy comparison.
Protein Sequence
Single Types:
Experimental Database High Prediction Medium Prediction Low Prediction
Experimental Database High Prediction Medium Prediction Low Prediction
Combined Types:
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
All Three Exp + DB Exp + High Pred Exp + Med Pred Exp + Low Pred DB + High Pred DB + Med Pred DB + Low Pred Cysteine
1-501MSTRSVSSSS11YRRMFGGPGT21ASRPSSSRSY31VTTSTRTYSL41GSALRPSTSR
51-10051SLYASSPGGV61YATRSSAVRL71RSSVPGVRLL81QDSVDFSLAD91AINTEFKNTR
101-150101TNEKVELQEL111NDRFANYIDK121VRFLEQQNKI131LLAELEQLKG141QGKSRLGDLY
151-200151EEEMRELRRQ161VDQLTNDKAR171VEVERDNLAE181DIMRLREKLQ191EEMLQREEAE
201-250201NTLQSFRQDV211DNASLARLDL221ERKVESLQEE231IAFLKKLHEE241EIQELQAQIQ
251-300251EQHVQIDVDV261SKPDLTAALR271DVRQQYESVA281AKNLQEAEEW291YKSKFADLSE
301-350301AANRNNDALR311QAKQESTEYR321RQVQSLTCEV331DALKGTNESL341ERQMREMEEN
351-400351FAVEAANYQD361TIGRLQDEIQ371NMKEEMARHL381REYQDLLNVK391MALDIEIATY
401-450401RKLLEGEESR411ISLPLPNFSS421LNLRETNLDS431LPLVDTHSKR441TLLIKTVETR
451-466451DGQVINETSQ461HHDDLE
Palmitoylation Sites Details
| Position | Sources | Domains | Experimental PMIDs |
|---|---|---|---|
| 328 | Experimental CYSMODDB SWISSPALM DBPTM Prediction (Low) | Intermediate filament protein | 29575903 |
Conservation Scores
PhyloP
PhastCons
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 217 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 310 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 319 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |