Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P12814-2 | ACTN1 | Alpha-actinin-1 (Alpha-actinin cytoskeletal isoform) (F-actin … | Homo sapiens (Human) | 887 aa |
Protein Details: P12814-2 (ACTN1)
Protein Information
| Accession | P12814-2 |
|---|---|
| Protein Names | Alpha-actinin-1 (Alpha-actinin cytoskeletal isoform) (F-actin cross-linking protein) (Non-muscle alpha-actinin-1) |
| Gene Symbol | ACTN1 |
| Organism | Homo sapiens (Human) |
| Length | 887 aa |
| Isoforms | |
| Related PMIDs | 31251020 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDHYDSQQTN11DYMQPEEDWD21RDLLLDPAWE31KQQRKTFTAW41CNSHLRKAGT
51-10051QIENIEEDFR61DGLKLMLLLE71VISGERLAKP81ERGKMRVHKI91SNVNKALDFI
101-150101ASKGVKLVSI111GAEEIVDGNV121KMTLGMIWTI131ILRFAIQDIS141VEETSAKEGL
151-200151LLWCQRKTAP161YKNVNIQNFH171ISWKDGLGFC181ALIHRHRPEL191IDYGKLRKDD
201-250201PLTNLNTAFD211VAEKYLDIPK221MLDAEDIVGT231ARPDEKAIMT241YVSSFYHAFS
251-300251GAQKAETAAN261RICKVLAVNQ271ENEQLMEDYE281KLASDLLEWI291RRTIPWLENR
301-350301VPENTMHAMQ311QKLEDFRDYR321RLHKPPKVQE331KCQLEINFNT341LQTKLRLSNR
351-400351PAFMPSEGRM361VSDINNAWGC371LEQVEKGYEE381WLLNEIRRLE391RLDHLAEKFR
401-450401QKASIHEAWT411DGKEAMLRQK421DYETATLSEI431KALLKKHEAF441ESDLAAHQDR
451-500451VEQIAAIAQE461LNELDYYDSP471SVNARCQKIC481DQWDNLGALT491QKRREALERT
501-550501EKLLETIDQL511YLEYAKRAAP521FNNWMEGAME531DLQDTFIVHT541IEEIQGLTTA
551-600551HEQFKATLPD561ADKERLAILG571IHNEVSKIVQ581TYHVNMAGTN591PYTTITPQEI
601-650601NGKWDHVRQL611VPRRDQALTE621EHARQQHNER631LRKQFGAQAN641VIGPWIQTKM
651-700651EEIGRISIEM661HGTLEDQLSH671LRQYEKSIVN681YKPKIDQLEG691DHQLIQEALI
701-750701FDNKHTNYTM711EHIRVGWEQL721LTTIARTINE731VENQILTRDA741KGISQEQMNE
751-800751FRASFNHFDR761KKTGMMDTDD771FRACLISMGY781NMGEAEFARI791MSIVDPNRLG
801-850801VVTFQAFIDF811MSRETADTDT821ADQVMASFKI831LAGDKNYITM841DELRRELPPD
851-887851QAEYCIARMA861PYTGPDSVPG871ALDYMSFSTA881LYGESDL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 41 | Calponin homology domain CH domain superfamily | - | - |
Deep-Palm: 0.72
|
|
| 154 | - |
HeLa
(29575903)
| - |
GPS-Palm: 0.96
Deep-Palm: 0.96
|
|
| 180 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.71
|
|
| 263 | - | - | - |
Deep-Palm: 0.84
|
|
| 332 | - | - | - |
Deep-Palm: 0.88
|
|
| 370 | - | - | - |
Deep-Palm: 0.52
|
|
| 476 | - | - | - |
Deep-Palm: 0.24
|
|
| 480 | - | - | - |
Deep-Palm: 0.42
|
|
| 774 | - | - | - |
Deep-Palm: 0.83
|
|
| 860 | - | - | - |
Deep-Palm: 0.95
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
LNCaP
Specificity: 1.000
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 41 | C → C | 0.001887 | SNP | Silent | UCEC |
| 250 | S → C | 0.002427 | SNP | Missense Mutation | BLCA |
| 321 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 377 | G → C | 0.001764 | SNP | Missense Mutation | LUAD |
| 480 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 632 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 714 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 717 | W → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 803 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 849 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 850 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 850 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |