Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P13707 | Gpd1 | Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic (GPD-C) … | Mus musculus (Mouse) | 349 aa |
Protein Details: P13707 (Gpd1)
Protein Information
| Accession | P13707 |
|---|---|
| Protein Names | Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic (GPD-C) (GPDH-C) (EC 1.1.1.8) |
| Gene Symbol | Gpd1 |
| Organism | Mus musculus (Mouse) |
| Length | 349 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 29733200 34200797 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAGKKVCIVG11SGNWGSAIAK21IVGSNAGRLA31HFDPRVTMWV41FEEDIGGRKL
51-10051TEIINTQHEN61VKYLPGHKLP71PNVVAIPDVV81QAATGADILV91FVVPHQFIGK
101-150101ICDQLKGHLK111ANTIGISLIK121GVDEGPNGLK131LISEVIGERL141GIPMSVLMGA
151-200151NIASEVAEEK161FCETTIGCKD171PAQGQLLKDL181MQTPNFRITV191VQEVDTVEIC
201-250201GALKNIVAVG211AGFCDGLGFG221DNTKAAVIRL231GLMEMIAFAK241LFCSGTVSSA
251-300251TFLESCGVAD261LITTCYGGRN271RKVAEAFART281GKSIEQLEKE291MLNGQKLQGP
301-349301QTARELHSIL311QHKGLVDKFP321LFTAVYKVCY331EGQPVGEFIR341CLQNHPEHM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 7 | SWISSPALM DBPTM CYSMODDB | Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.93
Deep-Palm: 0.04
|
| 102 | - | - | - |
GPS-Palm: 0.75
Deep-Palm: 0.89
|
|
| 162 | SWISSPALM DBPTM CYSMODDB | NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.78
Deep-Palm: 0.91
|
| 168 | SWISSPALM DBPTM CYSMODDB | NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.71
Deep-Palm: 0.94
|
| 200 | SWISSPALM DBPTM CYSMODDB | NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus |
Liver
(28526873)
| - |
Deep-Palm: 0.96
|
| 214 | - | - |
Liver
(34884899)
|
GPS-Palm: 0.82
Deep-Palm: 0.98
|
|
| 243 | - | - | - |
Deep-Palm: 0.92
|
|
| 256 | - | - | - |
Deep-Palm: 0.88
|
|
| 265 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.68
|
|
| 329 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.86
|
| 341 | SWISSPALM DBPTM CYSMODDB | - | - | - |
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.462
6
Liver
Specificity: 0.194
6/6 (100.0%)
5
Brain
Specificity: 0.161
5/5 (100.0%)
2
Testis
Specificity: 0.065
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
18
Brain tissue (Mass)
Specificity: 0.581
18/56 (32.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.