Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P16858 | Gapdh | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (EC 1.2.1.12) … | Mus musculus (Mouse) | 333 aa |
Protein Details: P16858 (Gapdh)
Protein Information
| Accession | P16858 |
|---|---|
| Protein Names | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (EC 1.2.1.12) (Peptidyl-cysteine S-nitrosylase GAPDH) (EC 2.6.99.-) |
| Gene Symbol | Gapdh |
| Organism | Mus musculus (Mouse) |
| Length | 333 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29575903 29733200 31311849 34200797 34884899 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVKVGVNGFG11RIGRLVTRAA21ICSGKVEIVA31INDPFIDLNY41MVYMFQYDST
51-10051HGKFNGTVKA61ENGKLVINGK71PITIFQERDP81TNIKWGEAGA91EYVVESTGVF
101-150101TTMEKAGAHL111KGGAKRVIIS121APSADAPMFV131MGVNHEKYDN141SLKIVSNASC
151-200151TTNCLAPLAK161VIHDNFGIVE171GLMTTVHAIT181ATQKTVDGPS191GKLWRDGRGA
201-250201AQNIIPASTG211AAKAVGKVIP221ELNGKLTGMA231FRVPTPNVSV241VDLTCRLEKP
251-300251AKYDDIKKVV261KQASEGPLKG271ILGYTEDQVV281SCDFNSNSHS291STFDAGAGIA
301-333301LNDNFVKLIS311WYDNEYGYSN321RVVDLMAYMA331SKE
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 22 | Glyceraldehyde/Erythrose phosphate dehydrogenase family Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain NAD(P)-binding domain superfamily |
brain
(39008777)
|
Brain
(35358180)
|
GPS-Palm: 0.92
Deep-Palm: 0.94
|
|
| 150 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
Brain
(31311849)
brain
(39008777)
MLE
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.93
Deep-Palm: 0.50
|
| 154 | SWISSPALM DBPTM CYSMODDB | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain |
Liver
(28526873)
Brain
(31311849)
brain
(39008777)
MLE
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.82
Deep-Palm: 0.77
|
| 245 | SWISSPALM DBPTM CYSMODDB | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain |
Brain
(31311849)
MLE
(39008777)
Liver
(28526873)
|
Liver
(37925639)
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.76
Deep-Palm: 0.96
|
| 282 | Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.50
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.455
5
Liver
Specificity: 0.077
5/5 (100.0%)
5
Brain
Specificity: 0.077
5/5 (100.0%)
1
Raw 264.7
Specificity: 0.015
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.889
48
Brain tissue (Mass)
Specificity: 0.738
48/56 (85.7%)
6
Liver tissue (Mass)
Specificity: 0.092
6/8 (75.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.