Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P19253 | Rpl13a | Large ribosomal subunit protein uL13 … | Mus musculus (Mouse) | 203 aa |
Protein Details: P19253 (Rpl13a)
Protein Information
| Accession | P19253 |
|---|---|
| Protein Names | Large ribosomal subunit protein uL13 (60S ribosomal protein L13a) (Transplantation antigen P198) (Tum-P198 antigen) |
| Gene Symbol | Rpl13a |
| Organism | Mus musculus (Mouse) |
| Length | 203 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 29733200 34884899 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAEGQVLVLD11GRGHLLGRLA21AIVAKQVLLG31RKVVVVRCEG41INISGNFYRN
51-10051KLKYLAFLRK61RMNTNPSRGP71YHFRAPSRIF81WRTVRGMLPH91KTKRGQAALE
101-150101RLKVLDGIPP111PYDKKKRMVV121PAALKVVRLK131PTRKFAYLGR141LAHEVGWKYQ
151-200151AVTATLEEKR161KEKAKMHYRK171KKQILRLRKQ181AEKNVEKKIC191KFTEVLKTNG
201-203201LLV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 38 | SWISSPALM DBPTM CYSMODDB | Large ribosomal subunit protein uL13 Large ribosomal subunit protein uL13 superfamily |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.74
Deep-Palm: 0.98
|
| 190 | - |
MLE
(39008777)
| - |
GPS-Palm: 0.75
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.714
5
Liver
Specificity: 0.312
5/5 (100.0%)
2
Brain
Specificity: 0.125
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
9
Brain tissue (Mass)
Specificity: 0.562
9/56 (16.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.