Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P20152 | Vim | Vimentin | Mus musculus (Mouse) | 466 aa |
Protein Details: P20152 (Vim)
Protein Information
| Accession | P20152 |
|---|---|
| Protein Names | Vimentin |
| Gene Symbol | Vim |
| Organism | Mus musculus (Mouse) |
| Length | 466 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29217618 34884899 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSTRSVSSSS11YRRMFGGSGT21SSRPSSNRSY31VTTSTRTYSL41GSALRPSTSR
51-10051SLYSSSPGGA61YVTRSSAVRL71RSSVPGVRLL81QDSVDFSLAD91AINTEFKNTR
101-150101TNEKVELQEL111NDRFANYIDK121VRFLEQQNKI131LLAELEQLKG141QGKSRLGDLY
151-200151EEEMRELRRQ161VDQLTNDKAR171VEVERDNLAE181DIMRLREKLQ191EEMLQREEAE
201-250201STLQSFRQDV211DNASLARLDL221ERKVESLQEE231IAFLKKLHDE241EIQELQAQIQ
251-300251EQHVQIDVDV261SKPDLTAALR271DVRQQYESVA281AKNLQEAEEW291YKSKFADLSE
301-350301AANRNNDALR311QAKQESNEYR321RQVQSLTCEV331DALKGTNESL341ERQMREMEEN
351-400351FALEAANYQD361TIGRLQDEIQ371NMKEEMARHL381REYQDLLNVK391MALDIEIATY
401-450401RKLLEGEESR411ISLPLPTFSS421LNLRETNLES431LPLVDTHSKR441TLLIKTVETR
451-466451DGQVINETSQ461HHDDLE
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 328 | SWISSPALM DBPTM CYSMODDB | Intermediate filament protein |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.65
Deep-Palm: 0.86
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.800
4
Liver
Specificity: 0.364
4/4 (100.0%)
1
Raw 264.7
Specificity: 0.091
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Brain tissue (Mass)
Specificity: 0.545
6/56 (10.7%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.