Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P23818 | Gria1 | Glutamate receptor 1 (GluR-1) (AMPA-selective … | Mus musculus (Mouse) | 907 aa |
Protein Details: P23818 (Gria1)
Protein Information
| Accession | P23818 |
|---|---|
| Protein Names | Glutamate receptor 1 (GluR-1) (AMPA-selective glutamate receptor 1) (GluR-A) (GluR-K1) (Glutamate receptor ionotropic, AMPA 1) (GluA1) |
| Gene Symbol | Gria1 |
| Organism | Mus musculus (Mouse) |
| Length | 907 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 31311849 34200797 35358180 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | dbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MPYIFAFFCT11GFLGAVVGAN21FPNNIQIGGL31FPNQQSQEHA41AFRFALSQLT
51-10051EPPKLLPQID61IVNISDSFEM71TYRFCSQFSK81GVYAIFGFYE91RRTVNMLTSF
101-150101CGALHVCFIT111PSFPVDTSNQ121FVLQLRPELQ131EALISIIDHY141KWQTFVYIYD
151-200151ADRGLSVLQR161VLDTAAEKNW171QVTAVNILTT181TEEGYRMLFQ191DLEKKKERLV
201-250201VVDCESERLN211AILGQIVKLE221KNGIGYHYIL231ANLGFMDIDL241NKFKESGANV
251-300251TGFQLVNYTD261TIPARIMQQW271RTSDARDHTR281VDWKRPKYTS291ALTYDGVKVM
301-350301AEAFQSLRRQ311RIDISRRGNA321GDCLANPAVP331WGQGIDIQRA341LQQVRFEGLT
351-400351GNVQFNEKGR361RTNYTLHVIE371MKHDGIRKIG381YWNEDDKFVP391AATDAQAGGD
401-450401NSSVQNRTYI411VTTILEDPYV421MLKKNANQFE431GNDRYEGYCV441ELAAEIAKHV
451-500451GYSYRLEIVS461DGKYGARDPD471TKAWNGMVGE481LVYGRADVAV491APLTITLVRE
501-550501EVIDFSKPFM511SLGISIMIKK521PQKSKPGVFS531FLDPLAYEIW541MCIVFAYIGV
551-600551SVVLFLVSRF561SPYEWHSEEF571EEGRDQTTSD581QSNEFGIFNS591LWFSLGAFMQ
601-650601QGCDISPRSL611SGRIVGGVWW621FFTLIIISSY631TANLAAFLTV641ERMVSPIESA
651-700651EDLAKQTEIA661YGTLEAGSTK671EFFRRSKIAV681FEKMWTYMKS691AEPSVFVRTT
701-750701EEGMIRVRKS711KGKYAYLLES721TMNEYIEQRK731PCDTMKVGGN741LDSKGYGIAT
751-800751PKGSALRGPV761NLAVLKLSEQ771GVLDKLKSKW781WYDKGECGSK791DSGSKDKTSA
801-850801LSLSNVAGVF811YILIGGLGLA821MLVALIEFCY831KSRSESKRMK841GFCLIPQQSI
851-900851NEAIRTSTLP861RNSGAGASGG871SGSGENGRVV881SQDFPKSMQS891IPCMSHSSGM
901-907901PLGATGL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 9 | - | - | - |
Deep-Palm: 0.01
|
|
| 75 | - | - |
Brain
(31311849)
|
Deep-Palm: 0.09
|
|
| 101 | - | - | - |
Deep-Palm: 0.20
|
|
| 107 | - | - | - |
Deep-Palm: 0.11
|
|
| 204 | Receptor family ligand binding region |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.71
Deep-Palm: 0.98
|
|
| 323 | Receptor family ligand binding region |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.74
Deep-Palm: 0.80
|
|
| 439 | - | - | - |
Deep-Palm: 0.55
|
|
| 542 | - | - | - |
Deep-Palm: 0.07
|
|
| 603 | DBPTM SWISSPALM | Ligand-gated ion channel | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.70
|
| 732 | - |
brain
(39008777)
| - |
Deep-Palm: 0.50
|
|
| 787 | - | - | - |
GPS-Palm: 0.66
Deep-Palm: 0.93
|
|
| 829 | DBPTM SWISSPALM | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.97
|
| 843 | - |
Brain
(31311849)
brain
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.93
Deep-Palm: 0.72
|
|
| 893 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.62
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
5
Brain
Specificity: 0.263
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
14
Brain tissue (Mass)
Specificity: 0.737
14/56 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.