Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P29341 | Pabpc1 | Polyadenylate-binding protein 1 (PABP-1) (Poly(A)-binding … | Mus musculus (Mouse) | 636 aa |
Protein Details: P29341 (Pabpc1)
Protein Information
| Accession | P29341 |
|---|---|
| Protein Names | Polyadenylate-binding protein 1 (PABP-1) (Poly(A)-binding protein 1) |
| Gene Symbol | Pabpc1 |
| Organism | Mus musculus (Mouse) |
| Length | 636 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MNPSAPSYPM11ASLYVGDLHP21DVTEAMLYEK31FSPAGPILSI41RVCRDMITRR
51-10051SLGYAYVNFQ61QPADAERALD71TMNFDVIKGK81PVRIMWSQRD91PSLRKSGVGN
101-150101IFIKNLDKSI111DNKALYDTFS121AFGNILSCKV131VCDENGSKGY141GFVHFETQEA
151-200151AERAIEKMNG161MLLNDRKVFV171GRFKSRKERE181AELGARAKEF191TNVYIKNFGE
201-250201DMDDERLKEL211FGKFGPALSV221KVMTDESGKS231KGFGFVSFER241HEDAQKAVDE
251-300251MNGKELNGKQ261IYVGRAQKKV271ERQTELKRKF281EQMKQDRITR291YQGVNLYVKN
301-350301LDDGIDDERL311RKEFSPFGTI321TSAKVMMEGG331RSKGFGFVCF341SSPEEATKAV
351-400351TEMNGRIVAT361KPLYVALAQR371KEERQAHLTN381QYMQRMASVR391AVPNPVINPY
401-450401QPAPPSGYFM411AAIPQTQNRA421AYYPPSQIAQ431LRPSPRWTAQ441GARPHPFQNM
451-500451PGAIRPAAPR461PPFSTMRPAS471SQVPRVMSTQ481RVANTSTQTM491GPRPAAAAAA
501-550501ATPAVRTVPQ511YKYAAGVRNP521QQHLNAQPQV531TMQQPAVHVQ541GQEPLTASML
551-600551ASAPPQEQKQ561MLGERLFPLI571QAMHPSLAGK581ITGMLLEIDN591SELLHMLESP
601-636601ESLRSKVDEA611VAVLQAHQAK621EAAQKAVNSA631TGVPTV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 43 | RNA BINDING PROTEIN Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.85
|
|
| 128 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.79
Deep-Palm: 0.60
|
|
| 132 | - | - | - |
GPS-Palm: 0.67
Deep-Palm: 0.12
|
|
| 339 | SWISSPALM DBPTM CYSMODDB | RNA recognition motif |
MLE
(39008777)
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.80
Deep-Palm: 0.89
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
6
Liver
Specificity: 0.333
6/6 (100.0%)
2
Testis
Specificity: 0.111
2/2 (100.0%)
1
Brain
Specificity: 0.056
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
9
Brain tissue (Mass)
Specificity: 0.500
9/56 (16.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.